UHGV-0119525

Genome information

Genome length 37,632 bps

CDS count 69

Completeness 98.99% (high-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119525
vOTU ID	vOTU-009064
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_307712
BioSample	SAMEA37080418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.5
Jumbo phage	No

Genome content
Genome length	37,632 bps
GC content	45.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	87.74%
Average CDS length	485.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119525_1	PHROG	phrog_297	holin	lysis
UHGV-0119525_1	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0119525_1	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0119525_1	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0119525_1	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0119525_1	COG	COG5546	NA	NA
UHGV-0119525_1	Structural annotation	COG5546	NA	NA
UHGV-0119525_2	PHROG	phrog_937	hemolysin	other
UHGV-0119525_2	eggNOG-mapper	428125.CLOLEP_00170	NA	NA
UHGV-0119525_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0119525_3	PHROG	phrog_291	endolysin	lysis
UHGV-0119525_3	UniRef90	UniRef90_A0A1C5NS63	Autolytic lysozyme	NA
UHGV-0119525_3	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0119525_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0119525_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0119525_3	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0119525_4	UniRef90	UniRef90_R6NDD3	Glycosyl hydrolase family 25	NA
UHGV-0119525_4	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0119525_5	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0119525_5	UniRef90	UniRef90_A7VT91	Peptidase S74 domain-containing protein	NA
UHGV-0119525_5	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0119525_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0119525_6	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0119525_7	PHROG	phrog_18725	NA	unknown function
UHGV-0119525_7	eggNOG-mapper	665956.HMPREF1032_02705	NA	NA
UHGV-0119525_8	PHROG	phrog_13879	NA	unknown function
UHGV-0119525_8	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0119525_9	PHROG	phrog_1194	NA	unknown function
UHGV-0119525_9	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0119525_9	Pfam	PF20458	NA	DUF6711
UHGV-0119525_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0119525_10	PHROG	phrog_28918	NA	unknown function
UHGV-0119525_10	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0119525_10	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0119525_12	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0119525_13	UniRef90	UniRef90_A0A843HLA7	NA	NA
UHGV-0119525_13	Pfam	PF16478	NA	DUF5055
UHGV-0119525_13	Structural annotation	PF16478	NA	NA
UHGV-0119525_14	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0119525_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0119525_15	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0119525_16	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0119525_17	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0119525_18	UniRef90	UniRef90_UPI001D07B1DB	phage head-tail connector protein	NA
UHGV-0119525_18	eggNOG-mapper	936580.HMPREF1516_0716	NA	NA
UHGV-0119525_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0119525_18	Structural annotation	TIGR01560	NA	NA
UHGV-0119525_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0119525_20	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0119525_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0119525_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0119525_22	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0119525_22	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0119525_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0119525_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0119525_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0119525_23	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0119525_23	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0119525_23	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0119525_23	COG	COG5410	NA	NA
UHGV-0119525_23	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0119525_24	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0119525_24	Structural annotation	PF12869, MF_00720, NF040991, COG4085	NA	NA
UHGV-0119525_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0119525_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0119525_25	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0119525_25	eggNOG-mapper	1294265.JCM21738_2843	Recombinase zinc beta ribbon domain	NA
UHGV-0119525_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0119525_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0119525_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0119525_25	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0119525_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0119525_28	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0119525_28	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0119525_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0119525_28	Structural annotation	PF16677	NA	NA
UHGV-0119525_36	PHROG	phrog_924	NA	unknown function
UHGV-0119525_36	UniRef90	UniRef90_A0A413FXK7	NA	NA
UHGV-0119525_36	Pfam	PF04448	NA	DUF551
UHGV-0119525_37	PHROG	phrog_22543	NA	unknown function
UHGV-0119525_37	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0119525_38	PHROG	phrog_21034	NA	unknown function
UHGV-0119525_38	eggNOG-mapper	379066.GAU_1809	NA	NA
UHGV-0119525_41	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0119525_41	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0119525_41	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0119525_41	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0119525_41	Pfam	PF06745	KaiC	ATPase
UHGV-0119525_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-0119525_41	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0119525_42	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0119525_42	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0119525_42	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0119525_44	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0119525_44	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0119525_44	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0119525_44	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0119525_44	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0119525_44	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0119525_45	PHROG	phrog_18107	NA	unknown function
UHGV-0119525_45	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0119525_45	Structural annotation	PF05037	NA	NA
UHGV-0119525_47	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0119525_47	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-0119525_47	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0119525_47	Pfam	PF13479	AAA domain	AAA_24
UHGV-0119525_47	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0119525_52	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0119525_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119525_52	UniRef90	UniRef90_A0A372WXU8	XRE family transcriptional regulator	NA
UHGV-0119525_52	eggNOG-mapper	768486.EHR_02755	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119525_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119525_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0119525_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0119525_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0119525_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119525_53	UniRef90	UniRef90_A0A372WZL5	XRE family transcriptional regulator	NA
UHGV-0119525_53	eggNOG-mapper	864563.HMPREF9166_0595	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119525_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119525_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0119525_53	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0119525_55	UniRef90	UniRef90_A0A7U9IDR3	DNA-binding helix-turn-helix protein	NA
UHGV-0119525_55	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0119525_55	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0119525_56	UniRef90	UniRef90_UPI00164AC43D	NA	NA
UHGV-0119525_56	Pfam	PF20124	NA	DUF6514
UHGV-0119525_56	Structural annotation	PF20124	NA	NA
UHGV-0119525_60	PHROG	phrog_6401	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0119525_60	UniRef90	UniRef90_A0A2V2EQP8	HTH_17 domain-containing protein	NA
UHGV-0119525_60	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0119525_60	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0119525_60	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0119525_63	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-0119525_65	UniRef90	UniRef90_R6PDN4	Conserved domain protein	NA
UHGV-0119525_65	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0119525_65	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0119525_66	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0119525_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119525_66	UniRef90	UniRef90_A0A1Y4RHB8	HTH cro/C1-type domain-containing protein (Fragment)	NA
UHGV-0119525_66	eggNOG-mapper	645991.Sgly_0310	PFAM Peptidase S24 S26A S26B, conserved region	NA
UHGV-0119525_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119525_66	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0119525_68	PHROG	phrog_17572	NA	unknown function
UHGV-0119525_68	UniRef90	UniRef90_A0A0H4LIJ8	Prophage ps2 protein 03	NA
UHGV-0119525_68	eggNOG-mapper	1499683.CCFF01000017_gene3026	NA	NA
UHGV-0119525_68	Structural annotation	PF13783, MF_01122	NA	NA