UHGV-0119540

Genome information

Genome length 21,022 bps

CDS count 26

Completeness 53.49% (medium-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119540
vOTU ID	vOTU-042445
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_291849
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.12
Jumbo phage	No

Genome content
Genome length	21,022 bps
GC content	44.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	94.81%
Average CDS length	771.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119540_1	PHROG	phrog_24386	NA	unknown function
UHGV-0119540_1	eggNOG-mapper	411460.RUMTOR_01374	COG NOG28949 non supervised orthologous group	NA
UHGV-0119540_1	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0119540_2	AcrCatalog	cluster_12858	NA	NA
UHGV-0119540_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119540_3	UniRef90	UniRef90_F7KU04	Sigma70_r4 domain-containing protein	NA
UHGV-0119540_3	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0119540_3	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0119540_3	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0119540_4	PHROG	phrog_10865	NA	unknown function
UHGV-0119540_4	eggNOG-mapper	1031288.AXAA01000022_gene1578	NA	NA
UHGV-0119540_4	Pfam	PF20505	NA	DUF6731
UHGV-0119540_4	Structural annotation	PF20505, NF001463	NA	NA
UHGV-0119540_5	eggNOG-mapper	748449.Halha_2167	NA	NA
UHGV-0119540_5	Structural annotation	PF15968	NA	NA
UHGV-0119540_6	PHROG	phrog_33355	NA	unknown function
UHGV-0119540_7	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0119540_7	UniRef90	UniRef90_UPI001E5C3DAC	phage terminase small subunit	NA
UHGV-0119540_7	eggNOG-mapper	1235792.C808_05361	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0119540_7	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0119540_7	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0119540_7	COG	COG5484	NA	NA
UHGV-0119540_7	Structural annotation	PF06056, NF040785, COG5484	NA	NA
UHGV-0119540_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0119540_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0119540_8	UniRef90	UniRef90_UPI001E355DEB	terminase family protein	NA
UHGV-0119540_8	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0119540_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0119540_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0119540_8	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0119540_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0119540_9	UniRef90	UniRef90_UPI001E2B3151	phage capsid protein	NA
UHGV-0119540_9	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0119540_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119540_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0119540_10	UniRef90	UniRef90_UPI001E42B66E	phage minor capsid protein	NA
UHGV-0119540_10	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0119540_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0119540_10	COG	COG2369	NA	NA
UHGV-0119540_10	Structural annotation	PF06152	NA	NA
UHGV-0119540_11	eggNOG-mapper	936596.HMPREF1495_2378	NA	NA
UHGV-0119540_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0119540_12	UniRef90	UniRef90_UPI001E53A7BB	phage scaffolding protein	NA
UHGV-0119540_12	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0119540_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0119540_12	Structural annotation	PF06810	NA	NA
UHGV-0119540_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0119540_13	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0119540_13	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0119540_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0119540_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0119540_15	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0119540_16	PHROG	phrog_3366	NA	unknown function
UHGV-0119540_16	eggNOG-mapper	573061.Clocel_3539	NA	NA
UHGV-0119540_16	Pfam	PF20536	NA	DUF6751
UHGV-0119540_16	Structural annotation	PF20536	NA	NA
UHGV-0119540_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0119540_17	UniRef90	UniRef90_UPI001E609FF9	minor capsid protein	NA
UHGV-0119540_17	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0119540_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0119540_17	Structural annotation	PF11114	NA	NA
UHGV-0119540_18	PHROG	phrog_3266	tail completion	connector
UHGV-0119540_18	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0119540_18	Structural annotation	PF12691	NA	NA
UHGV-0119540_19	PHROG	phrog_820	major tail protein	tail
UHGV-0119540_19	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0119540_19	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0119540_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0119540_20	PHROG	phrog_4450	NA	unknown function
UHGV-0119540_20	UniRef90	UniRef90_A0A3R5XYJ4	AP endonuclease	NA
UHGV-0119540_20	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0119540_20	Pfam	PF20378	NA	DUF6673
UHGV-0119540_21	PHROG	phrog_706	NA	unknown function
UHGV-0119540_21	UniRef90	UniRef90_UPI001E58B693	bacteriophage Gp15 family protein	NA
UHGV-0119540_21	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0119540_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0119540_21	Structural annotation	PF06854	NA	NA
UHGV-0119540_22	KOfam	K12472	EPS15; epidermal growth factor receptor substrate 15	NA
UHGV-0119540_22	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0119540_22	UniRef90	UniRef90_UPI001E5C8EFA	phage tail tape measure protein	NA
UHGV-0119540_22	eggNOG-mapper	642492.Clole_0830	Phage tail tape measure protein, TP901 family	NA
UHGV-0119540_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0119540_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0119540_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0119540_22	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0119540_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0119540_23	eggNOG-mapper	742723.HMPREF9477_00896	NA	NA
UHGV-0119540_23	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0119540_24	PHROG	phrog_538	minor tail protein	tail
UHGV-0119540_24	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0119540_24	eggNOG-mapper	742723.HMPREF9477_00895	NA	NA
UHGV-0119540_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0119540_24	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0119540_25	PHROG	phrog_9994	NA	unknown function
UHGV-0119540_25	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-0119540_25	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0119540_25	Structural annotation	PF20747	NA	NA