UHGV-0119574

Genome information

Genome length 29,326 bps

CDS count 43

Completeness 71.48% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119574
vOTU ID	vOTU-038933
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_299218
BioSample	SAMEA4431912
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.12
Jumbo phage	No

Genome content
Genome length	29,326 bps
GC content	44.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.47%
Average CDS length	634.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119574_1	KOfam	K14059	int; integrase	NA
UHGV-0119574_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0119574_1	UniRef90	UniRef90_A0A4P6M877	Tyrosine recombinase XerD	NA
UHGV-0119574_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0119574_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119574_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119574_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0119574_2	PHROG	phrog_27136	NA	unknown function
UHGV-0119574_2	UniRef90	UniRef90_UPI000A966D6C	Zn-ribbon domain-containing protein	NA
UHGV-0119574_2	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-0119574_3	PHROG	phrog_87	metallo-protease	other
UHGV-0119574_3	UniRef90	UniRef90_UPI000429F226	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0119574_3	eggNOG-mapper	1123075.AUDP01000032_gene692	IrrE N-terminal-like domain	NA
UHGV-0119574_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0119574_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0119574_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0119574_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0119574_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119574_4	UniRef90	UniRef90_A0A3E2UDB4	XRE family transcriptional regulator	NA
UHGV-0119574_4	eggNOG-mapper	742733.HMPREF9469_01471	sequence-specific DNA binding	NA
UHGV-0119574_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0119574_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119574_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0119574_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0119574_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0119574_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119574_5	UniRef90	UniRef90_A0A3E2UD82	XRE family transcriptional regulator	NA
UHGV-0119574_5	eggNOG-mapper	268407.PWYN_23755	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119574_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119574_8	UniRef90	UniRef90_UPI00129DCFE7	HTH domain-containing protein	NA
UHGV-0119574_8	Structural annotation	PF20063	NA	NA
UHGV-0119574_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0119574_11	UniRef90	UniRef90_A0A7G5MR42	Siphovirus Gp157 family protein	NA
UHGV-0119574_11	eggNOG-mapper	1232453.BAIF02000010_gene3334	Siphovirus Gp157	NA
UHGV-0119574_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0119574_11	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0119574_13	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0119574_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0119574_14	UniRef90	UniRef90_UPI001E617172	ATP-binding protein	NA
UHGV-0119574_14	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0119574_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0119574_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0119574_15	PHROG	phrog_18107	NA	unknown function
UHGV-0119574_15	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0119574_15	Structural annotation	PF05037	NA	NA
UHGV-0119574_16	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0119574_16	PHROG	phrog_11992	NA	unknown function
UHGV-0119574_16	UniRef90	UniRef90_A0A7G5MY72	ZnF_CHCC domain-containing protein	NA
UHGV-0119574_16	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-0119574_16	PADLOC	drt-UG29	DRT	DRT
UHGV-0119574_16	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0119574_16	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0119574_16	Structural annotation	PF01807	NA	NA
UHGV-0119574_17	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0119574_17	UniRef90	UniRef90_A0A7G5MY71	NA	NA
UHGV-0119574_17	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-0119574_17	Pfam	PF06048	NA	DUF927
UHGV-0119574_17	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0119574_17	COG	COG5519	NA	NA
UHGV-0119574_17	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0119574_18	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0119574_18	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0119574_18	UniRef90	UniRef90_UPI000931E6D4	Holliday junction resolvase RecU	NA
UHGV-0119574_18	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0119574_18	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0119574_18	Structural annotation	PF03838, MF_01490, NF040854, COG1591	NA	NA
UHGV-0119574_19	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0119574_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0119574_19	UniRef90	UniRef90_A0A7G5MY70	DEAD/DEAH box helicase	NA
UHGV-0119574_19	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0119574_19	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0119574_19	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0119574_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0119574_19	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0119574_19	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0119574_22	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0119574_22	PHROG	phrog_15077	NA	unknown function
UHGV-0119574_22	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0119574_22	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0119574_22	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0119574_23	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0119574_23	PHROG	phrog_36879	NA	unknown function
UHGV-0119574_23	UniRef90	UniRef90_A0A4V0Z6U5	Transcriptional repressor NrdR	NA
UHGV-0119574_23	eggNOG-mapper	1123013.AUIC01000003_gene416	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0119574_23	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0119574_24	PHROG	phrog_19011	NA	unknown function
UHGV-0119574_24	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0119574_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119574_25	Structural annotation	PF04545	NA	NA
UHGV-0119574_26	PHROG	phrog_2412	NA	unknown function
UHGV-0119574_26	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0119574_26	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-0119574_27	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0119574_27	UniRef90	UniRef90_UPI001D0435E4	phage terminase large subunit	NA
UHGV-0119574_27	eggNOG-mapper	357809.Cphy_2971	TIGRFAM Phage	NA
UHGV-0119574_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0119574_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0119574_27	COG	COG5410	NA	NA
UHGV-0119574_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0119574_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0119574_28	UniRef90	UniRef90_UPI001D03B0A8	capsid protein	NA
UHGV-0119574_28	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0119574_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119574_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0119574_29	UniRef90	UniRef90_A0A7G5N2V8	Minor capsid protein	NA
UHGV-0119574_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0119574_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0119574_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0119574_29	Structural annotation	PF06152	NA	NA
UHGV-0119574_31	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0119574_31	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0119574_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-0119574_32	UniRef90	UniRef90_A0A7G5N2V5	Capsid protein	NA
UHGV-0119574_32	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0119574_32	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0119574_33	PHROG	phrog_1378	NA	unknown function
UHGV-0119574_33	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0119574_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0119574_34	eggNOG-mapper	33035.JPJF01000093_gene2250	NA	NA
UHGV-0119574_35	PHROG	phrog_8710	NA	unknown function
UHGV-0119574_35	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0119574_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0119574_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0119574_36	eggNOG-mapper	33035.JPJF01000093_gene2248	NA	NA
UHGV-0119574_37	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0119574_37	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0119574_37	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0119574_37	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0119574_37	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0119574_38	PHROG	phrog_820	major tail protein	tail
UHGV-0119574_38	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0119574_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0119574_39	PHROG	phrog_8300	NA	unknown function
UHGV-0119574_39	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0119574_39	Structural annotation	PF06854	NA	NA
UHGV-0119574_40	PHROG	phrog_8355	NA	unknown function
UHGV-0119574_40	UniRef90	UniRef90_UPI00148B251E	Gp15 family bacteriophage protein	NA
UHGV-0119574_40	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0119574_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0119574_41	UniRef90	UniRef90_A0A2Y9BKW0	Phage-related protein	NA
UHGV-0119574_41	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0119574_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0119574_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0119574_42	PHROG	phrog_1194	NA	unknown function
UHGV-0119574_42	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0119574_42	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0119574_43	PHROG	phrog_6616	tail protein	tail
UHGV-0119574_43	eggNOG-mapper	476272.RUMHYD_01992	NA	NA