UHGV-0119609

Genome information

Genome length 37,231 bps

CDS count 62

Completeness 99.35% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119609
vOTU ID	vOTU-071088
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286090
BioSample	SAMEA4378291
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.15
Jumbo phage	No

Genome content
Genome length	37,231 bps
GC content	41.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.42%
Average CDS length	548.08 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119609_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0119609_1	PHROG	phrog_670	endolysin	lysis
UHGV-0119609_1	UniRef90	UniRef90_UPI000D6559B0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119609_1	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0119609_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0119609_1	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0119609_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0119609_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0119609_2	PHROG	phrog_443	holin	lysis
UHGV-0119609_2	UniRef90	UniRef90_A0A2V1JQV6	Membrane protein	NA
UHGV-0119609_2	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0119609_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0119609_2	Structural annotation	PF16945	NA	NA
UHGV-0119609_3	PHROG	phrog_1863	NA	unknown function
UHGV-0119609_3	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0119609_4	PHROG	phrog_9994	NA	unknown function
UHGV-0119609_4	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0119609_4	Structural annotation	PF20747	NA	NA
UHGV-0119609_5	PHROG	phrog_538	minor tail protein	tail
UHGV-0119609_5	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0119609_5	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0119609_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0119609_5	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0119609_6	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0119609_6	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0119609_6	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0119609_7	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0119609_7	PHROG	phrog_23464	NA	unknown function
UHGV-0119609_7	UniRef90	UniRef90_F3BAC7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0119609_7	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0119609_7	COG	COG5412	Phage-related protein	NA
UHGV-0119609_9	eggNOG-mapper	1384484.AEQU_1173	NA	NA
UHGV-0119609_10	PHROG	phrog_933	NA	unknown function
UHGV-0119609_11	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0119609_11	eggNOG-mapper	1121866.AUGK01000006_gene884	NA	NA
UHGV-0119609_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0119609_12	PHROG	phrog_5509	neck protein	connector
UHGV-0119609_12	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0119609_12	eggNOG-mapper	1450694.BTS2_0537	NA	NA
UHGV-0119609_12	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0119609_13	eggNOG-mapper	1121866.AUGK01000006_gene883	NA	NA
UHGV-0119609_13	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0119609_14	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0119609_14	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-0119609_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0119609_15	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0119609_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0119609_16	UniRef90	UniRef90_A0A415MTA6	Phage major capsid protein	NA
UHGV-0119609_16	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-0119609_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0119609_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0119609_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0119609_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0119609_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0119609_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0119609_17	UniRef90	UniRef90_A0A2V1JME2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0119609_17	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0119609_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0119609_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0119609_17	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0119609_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0119609_18	UniRef90	UniRef90_A0A415MTC5	Phage portal protein	NA
UHGV-0119609_18	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0119609_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0119609_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0119609_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0119609_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0119609_19	UniRef90	UniRef90_A0A415MTC4	Terminase large subunit	NA
UHGV-0119609_19	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0119609_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0119609_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0119609_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119609_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0119609_20	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0119609_20	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0119609_20	eggNOG-mapper	610130.Closa_0740	NA	NA
UHGV-0119609_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0119609_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0119609_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119609_21	UniRef90	UniRef90_A0A371ARK1	HNH endonuclease	NA
UHGV-0119609_21	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0119609_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119609_22	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0119609_23	PHROG	phrog_32322	NA	unknown function
UHGV-0119609_23	UniRef90	UniRef90_UPI000D659BBE	PF13754 domain-containing protein	NA
UHGV-0119609_23	eggNOG-mapper	1256908.HMPREF0373_00675	NA	NA
UHGV-0119609_23	Pfam	PF13754	NA	Big_3_4
UHGV-0119609_23	Structural annotation	PF13754	NA	NA
UHGV-0119609_24	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0119609_24	PHROG	phrog_11157	NA	unknown function
UHGV-0119609_24	UniRef90	UniRef90_A0A173UNA5	Bacillopeptidase F	NA
UHGV-0119609_24	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0119609_24	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0119609_24	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0119609_24	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0119609_24	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0119609_25	UniRef90	UniRef90_A0A6L9HM07	Chemotaxis protein	NA
UHGV-0119609_25	eggNOG-mapper	1232452.BAIB02000007_gene1632	NA	NA
UHGV-0119609_25	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0119609_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119609_27	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0119609_27	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0119609_27	Structural annotation	PF02996	NA	NA
UHGV-0119609_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0119609_28	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0119609_28	UniRef90	UniRef90_UPI0015948491	site-specific DNA-methyltransferase	NA
UHGV-0119609_28	eggNOG-mapper	1345695.CLSA_c30050	DNA methylase	NA
UHGV-0119609_28	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0119609_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0119609_28	COG	COG0863	DNA modification methylase	NA
UHGV-0119609_28	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0119609_29	PHROG	phrog_8684	NA	unknown function
UHGV-0119609_29	UniRef90	UniRef90_A0A844E7A6	YopX domain-containing protein	NA
UHGV-0119609_29	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0119609_29	Pfam	PF09643	YopX protein	YopX
UHGV-0119609_29	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0119609_30	PHROG	phrog_21026	NA	unknown function
UHGV-0119609_33	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0119609_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0119609_35	PHROG	phrog_26861	NA	unknown function
UHGV-0119609_35	UniRef90	UniRef90_A0A3A9H148	Single-stranded DNA-binding protein	NA
UHGV-0119609_35	eggNOG-mapper	1195236.CTER_4948	PFAM single-strand binding protein	NA
UHGV-0119609_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0119609_35	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0119609_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0119609_35	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0119609_36	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0119609_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0119609_37	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0119609_37	UniRef90	UniRef90_UPI001C0206B8	ParB/RepB/Spo0J family partition protein	NA
UHGV-0119609_37	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0119609_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0119609_37	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0119609_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0119609_37	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0119609_39	Structural annotation	PF05641	NA	NA
UHGV-0119609_40	PHROG	phrog_7566	NA	unknown function
UHGV-0119609_40	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0119609_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0119609_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0119609_41	UniRef90	UniRef90_A0A173UNZ4	Single-stranded DNA-binding protein	NA
UHGV-0119609_41	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0119609_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0119609_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0119609_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0119609_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0119609_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0119609_42	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0119609_42	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0119609_42	UniRef90	UniRef90_A0A173UM21	Ribonuclease H	NA
UHGV-0119609_42	eggNOG-mapper	1235790.C805_03782	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0119609_42	Pfam	PF00075	RNase H	RNase_H
UHGV-0119609_42	COG	COG0328	Ribonuclease HI	NA
UHGV-0119609_42	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0119609_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119609_43	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0119609_43	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0119609_45	PHROG	phrog_5070	NA	unknown function
UHGV-0119609_45	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0119609_45	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-0119609_45	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0119609_45	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0119609_45	Structural annotation	NF040481, COG2171	NA	NA
UHGV-0119609_46	Structural annotation	PF16311, NF002796	NA	NA
UHGV-0119609_48	PHROG	phrog_2316	NA	unknown function
UHGV-0119609_48	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0119609_48	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0119609_48	Pfam	PF16475	NA	DUF5052
UHGV-0119609_48	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0119609_49	PHROG	phrog_585	NA	unknown function
UHGV-0119609_49	UniRef90	UniRef90_UPI0009FD16BA	NA	NA
UHGV-0119609_49	eggNOG-mapper	97138.C820_00628	NA	NA
UHGV-0119609_49	Pfam	PF10711	NA	DUF2513
UHGV-0119609_49	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0119609_53	PHROG	phrog_2232	NA	unknown function
UHGV-0119609_53	UniRef90	UniRef90_UPI000D647EAE	NA	NA
UHGV-0119609_53	eggNOG-mapper	357809.Cphy_2977	NA	NA
UHGV-0119609_53	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0119609_53	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0119609_55	UniRef90	UniRef90_A0A416GY85	XRE family transcriptional regulator	NA
UHGV-0119609_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0119609_56	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0119609_56	UniRef90	UniRef90_UPI0018A1266A	helix-turn-helix transcriptional regulator	NA
UHGV-0119609_56	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0119609_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119609_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119609_56	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0119609_57	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0119609_57	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0119609_58	PHROG	phrog_87	metallo-protease	other
UHGV-0119609_58	UniRef90	UniRef90_A0A2V1JW48	Membrane protein	NA
UHGV-0119609_58	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0119609_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0119609_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0119609_58	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0119609_59	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0119609_59	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119609_59	UniRef90	UniRef90_A0A2V1JRH2	Type I site-specific deoxyribonuclease	NA
UHGV-0119609_59	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0119609_59	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0119609_59	COG	COG4748	NA	NA
UHGV-0119609_59	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0119609_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0119609_61	PHROG	phrog_95	integrase	integration and excision
UHGV-0119609_61	UniRef90	UniRef90_A0A374JP43	Recombinase family protein	NA
UHGV-0119609_61	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0119609_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0119609_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-0119609_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0119609_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0119609_61	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0119609_62	eggNOG-mapper	1256908.HMPREF0373_01541	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0119609_62	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA