UHGV-0119619

Genome information

Genome length 38,003 bps

CDS count 59

Completeness 98.58% (high-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119619
vOTU ID	vOTU-009432
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298994
BioSample	SAMEA4431899
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.93
Jumbo phage	No

Genome content
Genome length	38,003 bps
GC content	47.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.32%
Average CDS length	587.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119619_1	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0119619_1	PHROG	phrog_2649	endolysin	lysis
UHGV-0119619_1	UniRef90	UniRef90_R6ZH33	Peptidase_M15_4 domain-containing protein	NA
UHGV-0119619_1	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0119619_1	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0119619_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0119619_1	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0119619_3	PHROG	phrog_1129	holin	lysis
UHGV-0119619_3	UniRef90	UniRef90_A0A3E2U8R6	Enolase	NA
UHGV-0119619_3	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0119619_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0119619_3	Structural annotation	PF06946	NA	NA
UHGV-0119619_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0119619_4	Structural annotation	NF040910	NA	NA
UHGV-0119619_6	PHROG	phrog_19111	NA	unknown function
UHGV-0119619_6	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-0119619_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0119619_6	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0119619_7	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0119619_8	PHROG	phrog_18725	NA	unknown function
UHGV-0119619_8	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0119619_9	PHROG	phrog_13879	NA	unknown function
UHGV-0119619_9	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0119619_9	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0119619_10	PHROG	phrog_1194	NA	unknown function
UHGV-0119619_10	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0119619_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0119619_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0119619_11	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0119619_11	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0119619_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0119619_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0119619_12	PHROG	phrog_8355	NA	unknown function
UHGV-0119619_12	UniRef90	UniRef90_UPI000BA45828	Gp15 family bacteriophage protein	NA
UHGV-0119619_12	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0119619_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0119619_12	Structural annotation	PF06854	NA	NA
UHGV-0119619_13	PHROG	phrog_8300	NA	unknown function
UHGV-0119619_13	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0119619_13	Structural annotation	PF06854	NA	NA
UHGV-0119619_14	PHROG	phrog_820	major tail protein	tail
UHGV-0119619_14	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0119619_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0119619_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0119619_15	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0119619_15	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0119619_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0119619_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0119619_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0119619_16	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0119619_17	PHROG	phrog_8710	NA	unknown function
UHGV-0119619_17	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0119619_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0119619_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0119619_18	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0119619_19	PHROG	phrog_1378	NA	unknown function
UHGV-0119619_19	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0119619_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0119619_20	UniRef90	UniRef90_R6Z318	Phage major capsid protein	NA
UHGV-0119619_20	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0119619_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0119619_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0119619_21	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0119619_22	PHROG	phrog_774	NA	unknown function
UHGV-0119619_22	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0119619_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0119619_24	UniRef90	UniRef90_A0A417GP81	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0119619_24	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0119619_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0119619_24	COG	COG2369	NA	NA
UHGV-0119619_24	Structural annotation	PF06152	NA	NA
UHGV-0119619_25	PHROG	phrog_25639	NA	unknown function
UHGV-0119619_25	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0119619_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0119619_26	UniRef90	UniRef90_R7AJB6	Phage minor capsid protein	NA
UHGV-0119619_26	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0119619_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119619_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0119619_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0119619_27	UniRef90	UniRef90_UPI000B896FAD	terminase family protein	NA
UHGV-0119619_27	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0119619_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0119619_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0119619_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0119619_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0119619_28	UniRef90	UniRef90_A0A3R6UIT1	Terminase small subunit	NA
UHGV-0119619_28	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0119619_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0119619_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0119619_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0119619_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119619_29	UniRef90	UniRef90_UPI001BBBDD49	RNA polymerase subunit sigma-70	NA
UHGV-0119619_29	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0119619_29	Structural annotation	PF02996	NA	NA
UHGV-0119619_30	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0119619_30	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-0119619_30	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0119619_31	PHROG	phrog_6568	NA	unknown function
UHGV-0119619_31	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0119619_32	UniRef90	UniRef90_UPI001BC026BF	NA	NA
UHGV-0119619_32	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-0119619_32	Pfam	PF04448	NA	DUF551
UHGV-0119619_32	Structural annotation	NF041588	NA	NA
UHGV-0119619_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0119619_33	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0119619_33	UniRef90	UniRef90_R6ZWT3	Methyltransferase	NA
UHGV-0119619_33	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0119619_33	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0119619_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0119619_33	COG	COG0863	DNA modification methylase	NA
UHGV-0119619_33	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0119619_35	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0119619_35	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0119619_35	UniRef90	UniRef90_D6DIS8	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0119619_35	eggNOG-mapper	1232452.BAIB02000007_gene1641	sigma factor activity	NA
UHGV-0119619_35	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0119619_35	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0119619_35	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0119619_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0119619_35	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0119619_36	UniRef90	UniRef90_R7AV01	LexA_DNA_bind domain-containing protein	NA
UHGV-0119619_36	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0119619_36	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0119619_36	Structural annotation	PF01726, MF_00732, NF008273, COG1321	NA	NA
UHGV-0119619_38	Structural annotation	PF04703, MF_01909, NF033788, COG0640	NA	NA
UHGV-0119619_39	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119619_39	UniRef90	UniRef90_UPI001D090F0C	conserved phage C-terminal domain-containing protein	NA
UHGV-0119619_39	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0119619_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119619_39	Structural annotation	PF09524, PF21312, MF_01819, TIGR02220, NF033788, COG5529	NA	NA
UHGV-0119619_40	PHROG	phrog_7566	NA	unknown function
UHGV-0119619_40	UniRef90	UniRef90_A0A417GG52	Phosphoenolpyruvate carboxykinase	NA
UHGV-0119619_40	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0119619_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0119619_41	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0119619_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0119619_42	PHROG	phrog_14970	NA	unknown function
UHGV-0119619_42	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0119619_42	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0119619_42	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0119619_43	PHROG	phrog_30234	NA	unknown function
UHGV-0119619_43	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-0119619_47	eggNOG-mapper	610130.Closa_2884	NA	NA
UHGV-0119619_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119619_50	UniRef90	UniRef90_A0A416G2X0	XRE family transcriptional regulator	NA
UHGV-0119619_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119619_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119619_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0119619_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119619_51	UniRef90	UniRef90_R6ZMD8	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0119619_51	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119619_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119619_51	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0119619_52	PHROG	phrog_87	metallo-protease	other
UHGV-0119619_52	UniRef90	UniRef90_R6ZEH8	Putative toxin-antitoxin system toxin component	NA
UHGV-0119619_52	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0119619_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0119619_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0119619_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0119619_53	PHROG	phrog_1847	NA	unknown function
UHGV-0119619_53	UniRef90	UniRef90_R6ZTZ7	T5orf172 domain-containing protein	NA
UHGV-0119619_53	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0119619_53	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0119619_53	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0119619_53	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0119619_54	PHROG	phrog_7854	endolysin	lysis
UHGV-0119619_54	UniRef90	UniRef90_A0A174X6J3	Lipoprotein	NA
UHGV-0119619_54	eggNOG-mapper	720554.Clocl_3520	cell wall binding repeat	NA
UHGV-0119619_54	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0119619_54	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0119619_55	PHROG	phrog_16228	NA	unknown function
UHGV-0119619_55	UniRef90	UniRef90_R6Z895	Uma2 domain-containing protein	NA
UHGV-0119619_55	eggNOG-mapper	537007.BLAHAN_04955	Putative restriction endonuclease	NA
UHGV-0119619_55	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0119619_55	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0119619_55	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0119619_56	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-0119619_57	PHROG	phrog_10226	NA	unknown function
UHGV-0119619_57	eggNOG-mapper	1121091.AUMP01000069_gene1397	Restriction endonuclease	NA
UHGV-0119619_57	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0119619_57	Structural annotation	COG4127	NA	NA
UHGV-0119619_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0119619_59	PHROG	phrog_95	integrase	integration and excision
UHGV-0119619_59	UniRef90	UniRef90_R6ZEI1	Resolvase domain protein	NA
UHGV-0119619_59	eggNOG-mapper	610130.Closa_2885	Resolvase, N terminal domain	NA
UHGV-0119619_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0119619_59	Pfam	PF07508	Recombinase	Recombinase
UHGV-0119619_59	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0119619_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0119619_59	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA