UHGV-0119779

Genome information

vOTU vOTU-020250

Genome length 32,258 bps

CDS count 48

Completeness 76.36% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119779
vOTU ID	vOTU-020250
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_289936
BioSample	SAMEA4378326
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.75
Jumbo phage	No

Genome content
Genome length	32,258 bps
GC content	43.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	87.09%
Average CDS length	586.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119779_2	PHROG	phrog_18725	NA	unknown function
UHGV-0119779_2	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0119779_3	PHROG	phrog_13879	NA	unknown function
UHGV-0119779_3	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0119779_3	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0119779_4	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0119779_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0119779_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0119779_5	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0119779_5	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0119779_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0119779_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0119779_6	PHROG	phrog_706	NA	unknown function
UHGV-0119779_6	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0119779_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0119779_6	Structural annotation	PF06854	NA	NA
UHGV-0119779_7	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0119779_7	Structural annotation	PF10666	NA	NA
UHGV-0119779_8	PHROG	phrog_3099	NA	unknown function
UHGV-0119779_8	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0119779_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0119779_9	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0119779_9	Structural annotation	PF12691	NA	NA
UHGV-0119779_10	PHROG	phrog_3366	NA	unknown function
UHGV-0119779_10	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0119779_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0119779_11	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0119779_12	PHROG	phrog_283	major head protein	head and packaging
UHGV-0119779_12	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0119779_12	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0119779_12	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0119779_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0119779_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0119779_13	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0119779_13	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0119779_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0119779_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0119779_15	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0119779_15	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0119779_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0119779_15	COG	COG2369	NA	NA
UHGV-0119779_15	Structural annotation	PF06152	NA	NA
UHGV-0119779_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0119779_16	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0119779_16	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0119779_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0119779_16	Structural annotation	PF11114	NA	NA
UHGV-0119779_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0119779_17	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0119779_17	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0119779_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119779_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0119779_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0119779_18	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0119779_18	eggNOG-mapper	1121085.AUCI01000034_gene1980	Terminase-like family	NA
UHGV-0119779_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0119779_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0119779_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0119779_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0119779_19	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0119779_19	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0119779_19	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-0119779_19	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0119779_19	COG	COG5484	NA	NA
UHGV-0119779_19	Structural annotation	PF06056, NF040601	NA	NA
UHGV-0119779_20	PHROG	phrog_9479	NA	unknown function
UHGV-0119779_20	Structural annotation	PF15529	NA	NA
UHGV-0119779_22	PHROG	phrog_8680	NA	unknown function
UHGV-0119779_22	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0119779_22	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0119779_22	Pfam	PF14386	NA	DUF4417
UHGV-0119779_22	Structural annotation	PF14386	NA	NA
UHGV-0119779_23	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0119779_25	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0119779_25	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0119779_25	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0119779_25	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0119779_25	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0119779_25	COG	COG3617	Prophage antirepressor	NA
UHGV-0119779_25	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0119779_27	UniRef90	UniRef90_A0A6L9HFE6	Rha family transcriptional regulator (Fragment)	NA
UHGV-0119779_27	eggNOG-mapper	1567013.A0A0A7RVU3_9CAUD	NA	NA
UHGV-0119779_28	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0119779_28	UniRef90	UniRef90_K1UFX4	Antirepressor-phage associated protein (Fragment)	NA
UHGV-0119779_28	eggNOG-mapper	1321372.AQQB01000018_gene339	BRO family, N-terminal domain	NA
UHGV-0119779_28	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0119779_28	COG	COG3617	Prophage antirepressor	NA
UHGV-0119779_28	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0119779_31	Structural annotation	PF09871, NF004670	NA	NA
UHGV-0119779_32	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119779_32	UniRef90	UniRef90_A0A1I0B2Y8	DnaD and phage-associated domain-containing protein	NA
UHGV-0119779_32	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0119779_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0119779_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0119779_32	Structural annotation	PF04492, MF_01584, TIGR01610, TIGR02220, COG5625	NA	NA
UHGV-0119779_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0119779_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0119779_34	UniRef90	UniRef90_UPI0018F5FF03	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0119779_34	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0119779_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0119779_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0119779_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0119779_35	PHROG	phrog_7566	NA	unknown function
UHGV-0119779_35	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0119779_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0119779_36	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0119779_36	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0119779_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0119779_37	PHROG	phrog_14970	NA	unknown function
UHGV-0119779_37	eggNOG-mapper	435590.BVU_2861	double-strand break repair protein	NA
UHGV-0119779_37	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0119779_37	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0119779_37	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0119779_38	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0119779_38	UniRef90	UniRef90_UPI001EE9764E	siphovirus Gp157 family protein	NA
UHGV-0119779_38	eggNOG-mapper	397290.C810_05162	Siphovirus Gp157	NA
UHGV-0119779_38	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0119779_38	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0119779_42	PHROG	phrog_750	NA	unknown function
UHGV-0119779_42	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0119779_42	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0119779_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0119779_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119779_44	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-0119779_44	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0119779_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119779_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0119779_44	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0119779_45	PHROG	phrog_20886	NA	unknown function
UHGV-0119779_45	UniRef90	UniRef90_A0A7X8ZBG7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0119779_45	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0119779_46	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0119779_46	PHROG	phrog_19856	NA	unknown function
UHGV-0119779_46	UniRef90	UniRef90_UPI001C01FFC4	restriction endonuclease	NA
UHGV-0119779_46	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0119779_46	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0119779_46	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0119779_46	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0119779_47	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0119779_47	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0119779_47	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0119779_47	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0119779_47	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0119779_48	KOfam	K14059	int; integrase	NA
UHGV-0119779_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0119779_48	UniRef90	UniRef90_D4L3N3	Site-specific recombinase XerD	NA
UHGV-0119779_48	eggNOG-mapper	1235790.C805_00008	Phage integrase family	NA
UHGV-0119779_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119779_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119779_48	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA