UHGV-0120046

Genome information

Genome length 38,816 bps

CDS count 78

Completeness 93.64% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120046
vOTU ID	vOTU-067599
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_305289
BioSample	SAMEA103958110
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.01
Jumbo phage	No

Genome content
Genome length	38,816 bps
GC content	51.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	92.55%
Average CDS length	466.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120046_2	Structural annotation	PF12510	NA	NA
UHGV-0120046_3	PHROG	phrog_20016	NA	unknown function
UHGV-0120046_3	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0120046_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0120046_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0120046_4	PHROG	phrog_16490	NA	unknown function
UHGV-0120046_4	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0120046_5	PHROG	phrog_22984	NA	unknown function
UHGV-0120046_6	PHROG	phrog_21718	NA	unknown function
UHGV-0120046_6	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0120046_7	PHROG	phrog_3754	NA	unknown function
UHGV-0120046_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0120046_8	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0120046_9	PHROG	phrog_10091	holin	lysis
UHGV-0120046_9	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0120046_9	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0120046_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0120046_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0120046_9	COG	COG5546	NA	NA
UHGV-0120046_9	Structural annotation	COG5546	NA	NA
UHGV-0120046_10	PHROG	phrog_918	NA	unknown function
UHGV-0120046_10	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0120046_10	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0120046_10	Pfam	PF19791	NA	DUF6275
UHGV-0120046_10	Structural annotation	PF19791	NA	NA
UHGV-0120046_11	PHROG	phrog_937	hemolysin	other
UHGV-0120046_11	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0120046_12	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0120046_12	PHROG	phrog_894	endolysin	lysis
UHGV-0120046_12	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0120046_12	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0120046_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0120046_12	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0120046_12	COG	COG3108	NA	NA
UHGV-0120046_12	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0120046_13	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0120046_16	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-0120046_17	PHROG	phrog_9534	head protein	head and packaging
UHGV-0120046_17	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0120046_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0120046_18	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0120046_18	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0120046_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0120046_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0120046_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120046_19	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0120046_19	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0120046_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0120046_19	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0120046_20	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0120046_20	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-0120046_20	COG	COG5412	Phage-related protein	NA
UHGV-0120046_22	PHROG	phrog_18646	NA	unknown function
UHGV-0120046_22	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0120046_23	PHROG	phrog_885	major tail protein	tail
UHGV-0120046_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0120046_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0120046_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0120046_24	Structural annotation	PF11367	NA	NA
UHGV-0120046_25	PHROG	phrog_17977	NA	unknown function
UHGV-0120046_25	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0120046_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0120046_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0120046_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0120046_27	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0120046_27	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0120046_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0120046_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0120046_28	Structural annotation	PF06810	NA	NA
UHGV-0120046_29	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120046_29	UniRef90	UniRef90_A0A139QI12	HNH homing endonuclease	NA
UHGV-0120046_29	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0120046_29	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0120046_29	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0120046_29	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0120046_30	Structural annotation	PF18152	NA	NA
UHGV-0120046_31	PHROG	phrog_1233	NA	unknown function
UHGV-0120046_31	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0120046_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0120046_32	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0120046_32	eggNOG-mapper	1260356.D920_00145	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0120046_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0120046_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0120046_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0120046_34	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0120046_34	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0120046_34	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0120046_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0120046_34	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0120046_34	COG	COG2369	NA	NA
UHGV-0120046_34	Structural annotation	PF03496, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0120046_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0120046_35	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0120046_35	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0120046_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120046_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0120046_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120046_36	PHROG	phrog_10250	NA	unknown function
UHGV-0120046_36	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0120046_36	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0120046_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0120046_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120046_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120046_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0120046_37	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0120046_37	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0120046_37	Structural annotation	PF13542	NA	NA
UHGV-0120046_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120046_38	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0120046_38	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-0120046_38	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0120046_40	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0120046_45	UniRef90	UniRef90_A0A1I3J1T2	NA	NA
UHGV-0120046_45	Pfam	PF04448	NA	DUF551
UHGV-0120046_45	Structural annotation	NF041588	NA	NA
UHGV-0120046_46	PHROG	phrog_37916	NA	unknown function
UHGV-0120046_47	PHROG	phrog_2251	NA	unknown function
UHGV-0120046_47	Structural annotation	PF14001, TIGR03318	NA	NA
UHGV-0120046_48	PHROG	phrog_22543	NA	unknown function
UHGV-0120046_48	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0120046_49	PHROG	phrog_3136	NA	unknown function
UHGV-0120046_49	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0120046_49	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0120046_49	Pfam	PF04266	ASCH domain	ASCH
UHGV-0120046_49	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0120046_49	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0120046_50	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0120046_50	UniRef90	UniRef90_UPI00129D0AB3	Lar family restriction alleviation protein	NA
UHGV-0120046_50	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0120046_50	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0120046_50	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0120046_50	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0120046_51	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0120046_54	eggNOG-mapper	1123263.AUKY01000096_gene1822	C-5 cytosine-specific DNA methylase	NA
UHGV-0120046_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0120046_58	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0120046_58	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0120046_58	UniRef90	UniRef90_UPI0009529D7E	AAA family ATPase	NA
UHGV-0120046_58	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0120046_58	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0120046_58	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0120046_58	COG	COG0305	Replicative DNA helicase	NA
UHGV-0120046_58	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0120046_59	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120046_59	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0120046_59	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0120046_59	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0120046_60	PHROG	phrog_4973	NA	unknown function
UHGV-0120046_60	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0120046_60	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0120046_60	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0120046_61	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0120046_61	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0120046_61	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0120046_61	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0120046_61	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0120046_61	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0120046_61	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0120046_62	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0120046_62	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120046_62	UniRef90	UniRef90_UPI001958E09C	single-stranded DNA-binding protein	NA
UHGV-0120046_62	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0120046_62	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0120046_62	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0120046_62	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120046_62	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0120046_62	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0120046_63	UniRef90	UniRef90_UPI001D05CADB	HNH endonuclease	NA
UHGV-0120046_63	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0120046_63	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0120046_64	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0120046_64	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0120046_64	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0120046_64	Structural annotation	PF05772	NA	NA
UHGV-0120046_65	PHROG	phrog_14970	NA	unknown function
UHGV-0120046_65	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0120046_65	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0120046_65	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0120046_65	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0120046_65	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0120046_70	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0120046_71	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0120046_73	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0120046_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120046_73	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0120046_74	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120046_74	UniRef90	UniRef90_A0A317RX54	Transcriptional regulator with XRE-family HTH domain	NA
UHGV-0120046_74	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0120046_74	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0120046_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120046_74	Structural annotation	PF01381, PF08667, NF041951, COG1396	NA	NA
UHGV-0120046_75	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0120046_78	UniRef90	UniRef90_A0A373NUR9	Zinc ribbon domain-containing protein	NA
UHGV-0120046_78	eggNOG-mapper	1348338.ADILRU_1827	NA	NA
UHGV-0120046_78	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2