UHGV-0120103

Genome information

Genome length 34,090 bps

CDS count 53

Completeness 91.37% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120103
vOTU ID	vOTU-064769
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_289740
BioSample	SAMEA4378230
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.29
Jumbo phage	No

Genome content
Genome length	34,090 bps
GC content	47.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.94%
Average CDS length	594.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120103_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0120103_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0120103_1	UniRef90	UniRef90_A0A8J6TUR3	ECF RNA polymerase sigma factor SigK	NA
UHGV-0120103_1	eggNOG-mapper	272559.BF9343_1138	ECF sigma factor	NA
UHGV-0120103_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0120103_1	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0120103_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0120103_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0120103_1	Structural annotation	PF08281, PF04542, MF_00962, TIGR02985, COG1595	NA	NA
UHGV-0120103_3	KOfam	K14059	int; integrase	NA
UHGV-0120103_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0120103_3	UniRef90	UniRef90_UPI0011CB27B7	site-specific integrase	NA
UHGV-0120103_3	eggNOG-mapper	445971.ANASTE_01587	Belongs to the 'phage' integrase family	NA
UHGV-0120103_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0120103_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120103_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120103_3	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0120103_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0120103_4	PHROG	phrog_291	endolysin	lysis
UHGV-0120103_4	UniRef90	UniRef90_A0A1C5WYX1	Autolytic lysozyme	NA
UHGV-0120103_4	eggNOG-mapper	537013.CLOSTMETH_02711	hydrolase, family 25	NA
UHGV-0120103_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0120103_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0120103_4	Structural annotation	PF01183, NF002575, COG3757	NA	NA
UHGV-0120103_5	PHROG	phrog_10091	holin	lysis
UHGV-0120103_5	UniRef90	UniRef90_A0A1Y4IXC2	Phage holin	NA
UHGV-0120103_5	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0120103_5	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0120103_5	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0120103_5	COG	COG5546	NA	NA
UHGV-0120103_5	Structural annotation	COG5546	NA	NA
UHGV-0120103_6	PHROG	phrog_937	hemolysin	other
UHGV-0120103_6	eggNOG-mapper	1235792.C808_00576	NA	NA
UHGV-0120103_7	PHROG	phrog_30034	NA	unknown function
UHGV-0120103_7	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0120103_7	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0120103_7	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0120103_7	Structural annotation	PF14600	NA	NA
UHGV-0120103_8	PHROG	phrog_24451	NA	unknown function
UHGV-0120103_8	eggNOG-mapper	931276.Cspa_c07590	NA	NA
UHGV-0120103_9	PHROG	phrog_16573	NA	unknown function
UHGV-0120103_9	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0120103_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0120103_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0120103_10	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0120103_10	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0120103_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0120103_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0120103_10	COG	COG4926	Phage-related protein	NA
UHGV-0120103_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0120103_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120103_11	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0120103_11	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0120103_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0120103_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0120103_12	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0120103_12	UniRef90	UniRef90_UPI001E348C9F	phage tail tape measure protein	NA
UHGV-0120103_12	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0120103_12	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0120103_12	Structural annotation	PF20155	NA	NA
UHGV-0120103_15	PHROG	phrog_88	major tail protein	tail
UHGV-0120103_15	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0120103_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0120103_15	COG	COG5492	NA	NA
UHGV-0120103_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0120103_16	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0120103_16	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0120103_16	Structural annotation	TIGR01725	NA	NA
UHGV-0120103_17	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0120103_17	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0120103_18	PHROG	phrog_19734	NA	unknown function
UHGV-0120103_18	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0120103_18	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0120103_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0120103_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0120103_19	PHROG	phrog_749	NA	unknown function
UHGV-0120103_19	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0120103_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0120103_20	UniRef90	UniRef90_A0A328U7P3	Phage major capsid protein	NA
UHGV-0120103_20	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0120103_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0120103_20	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0120103_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0120103_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120103_20	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120103_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0120103_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0120103_21	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0120103_21	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0120103_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0120103_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0120103_21	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0120103_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0120103_22	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0120103_22	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0120103_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0120103_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0120103_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0120103_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0120103_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0120103_23	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0120103_23	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0120103_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0120103_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0120103_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0120103_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0120103_24	UniRef90	UniRef90_UPI001D57FD6D	P27 family phage terminase small subunit	NA
UHGV-0120103_24	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0120103_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0120103_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0120103_25	UniRef90	UniRef90_UPI0018774E0E	reductase	NA
UHGV-0120103_25	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0120103_25	PADLOC	SspD_00001	SspD	SSP
UHGV-0120103_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0120103_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0120103_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120103_26	UniRef90	UniRef90_A0A1C6FFC2	HNH domain-containing protein	NA
UHGV-0120103_26	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0120103_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120103_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120103_28	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0120103_28	UniRef90	UniRef90_A0A1V1HZ43	HTH_59 domain-containing protein	NA
UHGV-0120103_28	eggNOG-mapper	665956.HMPREF1032_00099	NA	NA
UHGV-0120103_28	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0120103_28	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0120103_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120103_29	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0120103_29	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-0120103_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0120103_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0120103_31	UniRef90	UniRef90_UPI0005A73BC1	J domain-containing protein	NA
UHGV-0120103_31	eggNOG-mapper	1089548.KI783301_gene2081	Heat shock protein DnaJ domain protein	NA
UHGV-0120103_31	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0120103_31	Structural annotation	PF00226	NA	NA
UHGV-0120103_35	KOfam	K04487	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	NA
UHGV-0120103_35	PHROG	phrog_12787	NA	unknown function
UHGV-0120103_35	UniRef90	UniRef90_A0A355V0H2	Cysteine desulfurase	NA
UHGV-0120103_35	eggNOG-mapper	1120746.CCNL01000013_gene2029	Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine	NA
UHGV-0120103_35	PADLOC	SspA_00001	SspA	SSP
UHGV-0120103_35	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-0120103_35	COG	COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	NA
UHGV-0120103_35	Structural annotation	PF00266, MF_00331, TIGR03403, COG1104	NA	NA
UHGV-0120103_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0120103_36	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0120103_36	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0120103_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0120103_36	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-0120103_38	KOfam	K03700	recU; recombination protein U	NA
UHGV-0120103_38	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0120103_38	UniRef90	UniRef90_R5IIA9	Holliday junction resolvase RecU	NA
UHGV-0120103_38	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0120103_38	Pfam	PF03838	Recombination protein U	RecU
UHGV-0120103_38	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0120103_38	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0120103_39	PHROG	phrog_24518	NA	unknown function
UHGV-0120103_39	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0120103_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120103_40	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0120103_40	Structural annotation	PF21578	NA	NA
UHGV-0120103_45	UniRef90	UniRef90_A0A2Z4GU98	Ribonuclease inhibitor	NA
UHGV-0120103_45	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0120103_48	UniRef90	UniRef90_UPI001C1173DA	helix-turn-helix domain-containing protein	NA
UHGV-0120103_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120103_48	Structural annotation	PF05339, NF041575, COG3655	NA	NA
UHGV-0120103_49	Structural annotation	PF11195	NA	NA
UHGV-0120103_51	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120103_51	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0120103_51	UniRef90	UniRef90_A0A358QWM1	XRE family transcriptional regulator	NA
UHGV-0120103_51	eggNOG-mapper	546271.Selsp_1361	Transcriptional	NA
UHGV-0120103_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0120103_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120103_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120103_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0120103_52	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0120103_52	UniRef90	UniRef90_UPI001B119A5C	helix-turn-helix domain-containing protein	NA
UHGV-0120103_52	eggNOG-mapper	10717.Q786F1_BPPH1	sequence-specific DNA binding	NA
UHGV-0120103_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0120103_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120103_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA