UHGV-0120127

Genome information

Genome length 56,901 bps

CDS count 102

Completeness 100.00% (complete)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120127
vOTU ID	vOTU-045813
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_289885
BioSample	SAMEA4378326
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.37
Jumbo phage	No

Genome content
Genome length	56,901 bps
GC content	47.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	85.75%
Average CDS length	481.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120127_1	PHROG	phrog_32409	tail fiber protein	tail
UHGV-0120127_1	eggNOG-mapper	420247.Msm_0052	S53, subtilisin kexin sedolisin	NA
UHGV-0120127_1	COG	COG1305	Transglutaminase-like enzyme, putative cysteine protease	NA
UHGV-0120127_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0120127_2	PHROG	phrog_291	endolysin	lysis
UHGV-0120127_2	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0120127_2	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0120127_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0120127_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0120127_2	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0120127_4	PHROG	phrog_15303	NA	unknown function
UHGV-0120127_6	PHROG	phrog_21718	NA	unknown function
UHGV-0120127_8	PHROG	phrog_16490	NA	unknown function
UHGV-0120127_8	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0120127_9	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0120127_10	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0120127_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0120127_11	UniRef90	UniRef90_A0A1M6GIA1	BRO family, N-terminal domain	NA
UHGV-0120127_11	eggNOG-mapper	556261.HMPREF0240_03657	Phage antirepressor protein	NA
UHGV-0120127_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0120127_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0120127_11	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0120127_12	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-0120127_12	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0120127_12	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0120127_13	Structural annotation	PF07878	NA	NA
UHGV-0120127_14	Pfam	PF04448	NA	DUF551
UHGV-0120127_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0120127_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0120127_15	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0120127_15	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0120127_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0120127_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0120127_15	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0120127_16	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120127_16	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0120127_16	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0120127_16	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0120127_16	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0120127_16	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0120127_16	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0120127_17	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0120127_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120127_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120127_17	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0120127_21	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0120127_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120127_22	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0120127_22	eggNOG-mapper	428125.CLOLEP_02738	SMART helix-turn-helix domain protein	NA
UHGV-0120127_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0120127_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120127_22	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0120127_23	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0120127_23	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0120127_23	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0120127_23	Structural annotation	TIGR03070	NA	NA
UHGV-0120127_24	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0120127_24	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0120127_24	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0120127_24	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0120127_24	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0120127_24	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0120127_24	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0120127_24	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0120127_24	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0120127_25	Structural annotation	PF10922	NA	NA
UHGV-0120127_27	Structural annotation	TIGR03826	NA	NA
UHGV-0120127_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0120127_29	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0120127_30	Structural annotation	PF14143	NA	NA
UHGV-0120127_31	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0120127_31	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-0120127_31	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0120127_31	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0120127_31	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0120127_31	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0120127_33	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0120127_33	Structural annotation	PF13451	NA	NA
UHGV-0120127_34	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120127_34	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0120127_34	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0120127_34	Pfam	PF04404	ERF superfamily	ERF
UHGV-0120127_34	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0120127_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0120127_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120127_35	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0120127_35	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0120127_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0120127_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0120127_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120127_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0120127_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0120127_36	PHROG	phrog_4572	NA	unknown function
UHGV-0120127_36	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0120127_37	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0120127_37	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0120127_37	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0120127_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0120127_37	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0120127_40	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0120127_40	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0120127_40	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0120127_40	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0120127_41	PHROG	phrog_30930	NA	unknown function
UHGV-0120127_41	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-0120127_41	Structural annotation	PF05037	NA	NA
UHGV-0120127_45	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0120127_46	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0120127_48	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0120127_50	Structural annotation	PF16677	NA	NA
UHGV-0120127_52	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0120127_52	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0120127_52	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0120127_52	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0120127_53	PHROG	phrog_30878	NA	unknown function
UHGV-0120127_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0120127_57	PHROG	phrog_11947	NA	unknown function
UHGV-0120127_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120127_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120127_57	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0120127_61	Structural annotation	NF041588	NA	NA
UHGV-0120127_62	PHROG	phrog_7704	NA	unknown function
UHGV-0120127_62	UniRef90	UniRef90_A0A837F7R6	NA	NA
UHGV-0120127_62	Pfam	PF04448	NA	DUF551
UHGV-0120127_62	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0120127_62	Structural annotation	NF041588	NA	NA
UHGV-0120127_64	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0120127_64	Structural annotation	PF14354	NA	NA
UHGV-0120127_65	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0120127_65	Pfam	PF19808	NA	DUF6291
UHGV-0120127_65	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120127_65	Structural annotation	PF19808	NA	NA
UHGV-0120127_66	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0120127_66	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0120127_66	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0120127_66	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0120127_66	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0120127_66	COG	COG0305	Replicative DNA helicase	NA
UHGV-0120127_66	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0120127_67	PHROG	phrog_1709	NA	unknown function
UHGV-0120127_67	eggNOG-mapper	1235793.C809_02477	NA	NA
UHGV-0120127_70	eggNOG-mapper	1378168.N510_00538	NA	NA
UHGV-0120127_73	Structural annotation	PF16857, MF_01553, NF010188, COG5503	NA	NA
UHGV-0120127_74	PHROG	phrog_14275	NA	unknown function
UHGV-0120127_74	UniRef90	UniRef90_A0A2V3JL54	zinc_ribbon_2 domain-containing protein	NA
UHGV-0120127_74	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0120127_74	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0120127_74	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0120127_75	PHROG	phrog_14275	NA	unknown function
UHGV-0120127_75	eggNOG-mapper	1280696.ATVY01000001_gene3550	NA	NA
UHGV-0120127_76	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0120127_76	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0120127_76	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-0120127_76	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0120127_76	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0120127_76	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0120127_76	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0120127_77	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0120127_79	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0120127_79	PHROG	phrog_95	integrase	integration and excision
UHGV-0120127_79	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0120127_79	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0120127_79	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0120127_79	Pfam	PF07508	Recombinase	Recombinase
UHGV-0120127_79	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0120127_79	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0120127_80	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0120127_80	Structural annotation	PF02796, PF15653	NA	NA
UHGV-0120127_82	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0120127_83	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0120127_83	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0120127_83	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0120127_83	COG	COG5410	NA	NA
UHGV-0120127_83	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0120127_85	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0120127_85	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0120127_85	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-0120127_85	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0120127_85	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0120127_85	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0120127_85	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0120127_86	PHROG	phrog_64	portal protein	head and packaging
UHGV-0120127_86	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0120127_86	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0120127_86	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120127_86	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0120127_87	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-0120127_90	PHROG	phrog_29	major head protein	head and packaging
UHGV-0120127_90	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0120127_90	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0120127_90	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0120127_90	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0120127_91	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0120127_91	Structural annotation	TIGR01560	NA	NA
UHGV-0120127_92	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0120127_92	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0120127_93	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0120127_94	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0120127_95	PHROG	phrog_158	major tail protein	tail
UHGV-0120127_95	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0120127_95	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0120127_95	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0120127_96	Pfam	PF16478	NA	DUF5055
UHGV-0120127_96	Structural annotation	PF16478	NA	NA
UHGV-0120127_97	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0120127_98	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0120127_98	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0120127_98	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0120127_99	PHROG	phrog_1194	NA	unknown function
UHGV-0120127_99	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0120127_99	Pfam	PF20458	NA	DUF6711
UHGV-0120127_99	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0120127_100	PHROG	phrog_6616	tail protein	tail
UHGV-0120127_100	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-0120127_100	Structural annotation	PF05113, NF033848, COG3500	NA	NA