UHGV-0120135

Genome information

Genome length 43,678 bps

CDS count 64

Completeness 60.80% (medium-quality)

geNomad score 0.9687

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120135
vOTU ID	vOTU-016241
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_289892
BioSample	SAMEA4378326
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	60.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9687
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.72
Jumbo phage	No

Genome content
Genome length	43,678 bps
GC content	40.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.08%
Average CDS length	638.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120135_1	UniRef90	UniRef90_UPI001F30F1FD	NA	NA
UHGV-0120135_1	eggNOG-mapper	153721.MYP_5008	NA	NA
UHGV-0120135_1	Pfam	PF13271	NA	DUF4062
UHGV-0120135_2	UniRef90	UniRef90_UPI001D097A8A	helix-turn-helix domain-containing protein	NA
UHGV-0120135_2	eggNOG-mapper	435591.BDI_0844	Peptidase S24-like	NA
UHGV-0120135_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0120135_2	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0120135_5	UniRef90	UniRef90_A0A2N2X6I3	HTH cro/C1-type domain-containing protein	NA
UHGV-0120135_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120135_5	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0120135_6	UniRef90	UniRef90_F3PDS9	Conserved domain protein	NA
UHGV-0120135_6	eggNOG-mapper	762984.HMPREF9445_00137	NA	NA
UHGV-0120135_6	Structural annotation	NF033948	NA	NA
UHGV-0120135_9	UniRef90	UniRef90_F3PDT5	Conserved domain protein	NA
UHGV-0120135_9	eggNOG-mapper	762984.HMPREF9445_00143	NA	NA
UHGV-0120135_10	KOfam	K07687	rcsB; two-component system, NarL family, captular synthesis response regulator RcsB	NA
UHGV-0120135_10	UniRef90	UniRef90_F3PDT6	Transcriptional regulator, LuxR family	NA
UHGV-0120135_10	eggNOG-mapper	762984.HMPREF9445_00144	helix_turn_helix, Lux Regulon	NA
UHGV-0120135_10	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0120135_10	Structural annotation	PF00196, COG2771	NA	NA
UHGV-0120135_11	PHROG	phrog_18744	NA	unknown function
UHGV-0120135_11	UniRef90	UniRef90_F3PDT7	Toxin-antitoxin system, antitoxin component, AbrB family	NA
UHGV-0120135_11	eggNOG-mapper	762984.HMPREF9445_00145	NA	NA
UHGV-0120135_11	Structural annotation	NF040990	NA	NA
UHGV-0120135_12	eggNOG-mapper	762984.HMPREF9445_00146	NA	NA
UHGV-0120135_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120135_15	UniRef90	UniRef90_A0A374V7H9	DNA-binding protein	NA
UHGV-0120135_15	eggNOG-mapper	762984.HMPREF9445_00147	AAA domain	NA
UHGV-0120135_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0120135_15	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0120135_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0120135_16	PHROG	phrog_35319	NA	unknown function
UHGV-0120135_16	UniRef90	UniRef90_A0A374V7I3	HNH endonuclease	NA
UHGV-0120135_16	eggNOG-mapper	762984.HMPREF9445_00148	NA	NA
UHGV-0120135_16	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-0120135_17	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120135_17	UniRef90	UniRef90_A0A413GSH5	NA	NA
UHGV-0120135_17	eggNOG-mapper	357276.EL88_11515	NA	NA
UHGV-0120135_17	Pfam	PF11325	NA	DUF3127
UHGV-0120135_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120135_17	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0120135_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0120135_18	eggNOG-mapper	357276.EL88_11510	NA	NA
UHGV-0120135_18	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0120135_20	PHROG	phrog_35807	NA	unknown function
UHGV-0120135_20	UniRef90	UniRef90_A0A3E4KJL2	RNA polymerase subunit sigma	NA
UHGV-0120135_20	eggNOG-mapper	357276.EL88_11505	RNA polymerase activity	NA
UHGV-0120135_20	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0120135_20	Structural annotation	PF14902	NA	NA
UHGV-0120135_21	AcrCatalog	cluster_25385	NA	NA
UHGV-0120135_22	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120135_22	UniRef90	UniRef90_UPI000E4AE634	recombination protein NinG	NA
UHGV-0120135_22	eggNOG-mapper	357276.EL88_11490	Bacteriophage Lambda NinG protein	NA
UHGV-0120135_22	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0120135_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120135_22	Structural annotation	PF05766	NA	NA
UHGV-0120135_23	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0120135_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0120135_23	UniRef90	UniRef90_D1K9K1	Helicase C-terminal domain protein	NA
UHGV-0120135_23	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-0120135_23	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0120135_23	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0120135_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0120135_23	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0120135_23	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0120135_25	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120135_25	UniRef90	UniRef90_A0A413UTP6	NA	NA
UHGV-0120135_25	eggNOG-mapper	1347393.HG726021_gene508	NA	NA
UHGV-0120135_25	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0120135_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120135_25	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0120135_26	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0120135_26	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0120135_26	UniRef90	UniRef90_A0A3A5R353	ATP-binding protein	NA
UHGV-0120135_26	eggNOG-mapper	1347393.HG726021_gene507	DNA-dependent DNA replication	NA
UHGV-0120135_26	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0120135_26	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0120135_27	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0120135_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0120135_27	UniRef90	UniRef90_I9RH12	Helicase ATP-binding domain-containing protein	NA
UHGV-0120135_27	eggNOG-mapper	357276.EL88_11455	DNA methylase	NA
UHGV-0120135_27	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0120135_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0120135_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0120135_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0120135_27	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0120135_29	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0120135_31	PHROG	phrog_12005	NA	unknown function
UHGV-0120135_34	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-0120135_35	PHROG	phrog_874	NA	unknown function
UHGV-0120135_35	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0120135_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0120135_36	PHROG	phrog_98	NA	unknown function
UHGV-0120135_36	UniRef90	UniRef90_UPI000E57ECE2	YopX family protein	NA
UHGV-0120135_36	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0120135_36	Pfam	PF09643	YopX protein	YopX
UHGV-0120135_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0120135_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0120135_37	Structural annotation	PF08928	NA	NA
UHGV-0120135_39	UniRef90	UniRef90_UPI00189A3D7A	P-loop NTPase fold protein	NA
UHGV-0120135_39	eggNOG-mapper	985255.APHJ01000047_gene400	KAP family P-loop domain	NA
UHGV-0120135_39	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-0120135_39	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-0120135_39	Structural annotation	PF07693, NF041923, COG4928	NA	NA
UHGV-0120135_40	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0120135_40	UniRef90	UniRef90_UPI000E584980	ParB N-terminal domain-containing protein	NA
UHGV-0120135_40	eggNOG-mapper	357276.EL88_08430	ParB-like nuclease domain	NA
UHGV-0120135_40	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0120135_40	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0120135_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0120135_40	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0120135_41	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0120135_41	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0120135_41	UniRef90	UniRef90_A0A1B3JI24	DNA modification	NA
UHGV-0120135_41	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0120135_41	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0120135_42	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0120135_42	UniRef90	UniRef90_R6S335	Beta-galactoside alpha-2 3-sialyltransferase	NA
UHGV-0120135_42	eggNOG-mapper	1121101.HMPREF1532_02596	Helix-turn-helix of insertion element transposase	NA
UHGV-0120135_42	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0120135_42	Structural annotation	PF07141	NA	NA
UHGV-0120135_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120135_43	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0120135_43	UniRef90	UniRef90_UPI000E572FA0	terminase large subunit	NA
UHGV-0120135_43	eggNOG-mapper	1121101.HMPREF1532_02597	Terminase RNAseH like domain	NA
UHGV-0120135_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0120135_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0120135_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120135_43	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0120135_44	PHROG	phrog_28240	NA	unknown function
UHGV-0120135_44	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0120135_44	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0120135_45	PHROG	phrog_33245	NA	unknown function
UHGV-0120135_45	UniRef90	UniRef90_F3PDW1	Conserved domain protein	NA
UHGV-0120135_45	eggNOG-mapper	762984.HMPREF9445_00169	NA	NA
UHGV-0120135_45	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0120135_46	PHROG	phrog_31246	NA	unknown function
UHGV-0120135_46	UniRef90	UniRef90_F3PDW2	Conserved domain protein	NA
UHGV-0120135_46	eggNOG-mapper	762984.HMPREF9445_00170	NA	NA
UHGV-0120135_47	PHROG	phrog_37065	NA	unknown function
UHGV-0120135_47	eggNOG-mapper	1236514.BAKL01000015_gene1631	NA	NA
UHGV-0120135_47	Structural annotation	PF17972, PF06199, NF040788	NA	NA
UHGV-0120135_48	PHROG	phrog_33698	NA	unknown function
UHGV-0120135_48	eggNOG-mapper	762984.HMPREF9445_00172	NA	NA
UHGV-0120135_48	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0120135_49	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0120135_49	PHROG	phrog_37298	NA	unknown function
UHGV-0120135_49	UniRef90	UniRef90_F3PDW5	Phage tail tape measure protein, TP901 family	NA
UHGV-0120135_49	eggNOG-mapper	762984.HMPREF9445_00173	domain protein	NA
UHGV-0120135_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0120135_49	COG	COG1511	NA	NA
UHGV-0120135_49	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0120135_50	PHROG	phrog_17790	NA	unknown function
UHGV-0120135_50	UniRef90	UniRef90_A0A3N2MW96	Mor domain-containing protein	NA
UHGV-0120135_50	eggNOG-mapper	762984.HMPREF9445_00174	NA	NA
UHGV-0120135_51	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0120135_51	PHROG	phrog_33547	NA	unknown function
UHGV-0120135_51	UniRef90	UniRef90_A0A3E5EXQ8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0120135_51	eggNOG-mapper	762984.HMPREF9445_00179	Clp protease	NA
UHGV-0120135_51	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0120135_51	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0120135_51	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0120135_52	PHROG	phrog_38780	NA	unknown function
UHGV-0120135_52	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0120135_52	eggNOG-mapper	762984.HMPREF9445_00180	NA	NA
UHGV-0120135_52	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0120135_53	PHROG	phrog_21217	NA	unknown function
UHGV-0120135_53	eggNOG-mapper	762984.HMPREF9445_00181	NA	NA
UHGV-0120135_54	PHROG	phrog_37138	NA	unknown function
UHGV-0120135_54	UniRef90	UniRef90_F3PDX4	Conserved domain protein	NA
UHGV-0120135_54	eggNOG-mapper	762984.HMPREF9445_00182	NA	NA
UHGV-0120135_55	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0120135_55	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-0120135_55	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0120135_56	PHROG	phrog_24616	NA	unknown function
UHGV-0120135_56	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0120135_56	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0120135_56	Structural annotation	PF20459	NA	NA
UHGV-0120135_57	PHROG	phrog_26822	NA	unknown function
UHGV-0120135_57	eggNOG-mapper	1236514.BAKL01000067_gene4348	Phage minor structural protein	NA
UHGV-0120135_57	COG	COG4926	Phage-related protein	NA
UHGV-0120135_57	Structural annotation	PF20942, PF18141, NF000799, COG1018	NA	NA
UHGV-0120135_58	PHROG	phrog_3267	tail protein	tail
UHGV-0120135_58	Structural annotation	PF02010, MF_04116, NF041431, COG1361	NA	NA
UHGV-0120135_60	PHROG	phrog_3267	tail protein	tail
UHGV-0120135_60	Structural annotation	PF16407, MF_04116, NF033597	NA	NA
UHGV-0120135_61	Structural annotation	PF01835	NA	NA