UHGV-0120142

Genome information

vOTU vOTU-020720

Genome length 30,956 bps

CDS count 52

Completeness 68.34% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120142
vOTU ID	vOTU-020720
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_294954
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.11
Jumbo phage	No

Genome content
Genome length	30,956 bps
GC content	42.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.90%
Average CDS length	551.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120142_1	PHROG	phrog_7823	NA	unknown function
UHGV-0120142_1	eggNOG-mapper	33035.JPJF01000158_gene3562	NA	NA
UHGV-0120142_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0120142_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0120142_2	UniRef90	UniRef90_A0A8G1TFV9	Helix-turn-helix domain-containing protein	NA
UHGV-0120142_2	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0120142_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120142_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0120142_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0120142_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0120142_3	UniRef90	UniRef90_A0A174QJI6	XRE family transcriptional regulator	NA
UHGV-0120142_3	eggNOG-mapper	478749.BRYFOR_07571	NA	NA
UHGV-0120142_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0120142_4	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0120142_4	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-0120142_4	eggNOG-mapper	226185.EF_2851	NA	NA
UHGV-0120142_4	Pfam	PF11195	NA	DUF2829
UHGV-0120142_4	Structural annotation	PF11195	NA	NA
UHGV-0120142_5	PHROG	phrog_750	NA	unknown function
UHGV-0120142_5	eggNOG-mapper	1158614.I592_00583	NA	NA
UHGV-0120142_5	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0120142_8	Structural annotation	PF11280	NA	NA
UHGV-0120142_10	PHROG	phrog_34638	NA	unknown function
UHGV-0120142_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120142_12	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0120142_12	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0120142_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0120142_14	PHROG	phrog_7566	NA	unknown function
UHGV-0120142_14	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0120142_15	UniRef90	UniRef90_A0A7G5N137	Response regulator transcription factor	NA
UHGV-0120142_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0120142_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120142_16	UniRef90	UniRef90_A0A8G1WUX4	Single-stranded DNA-binding protein	NA
UHGV-0120142_16	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0120142_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0120142_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0120142_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120142_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0120142_17	UniRef90	UniRef90_A4XKQ3	Ribonuclease H	NA
UHGV-0120142_17	eggNOG-mapper	351627.Csac_1903	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0120142_17	COG	COG0328	Ribonuclease HI	NA
UHGV-0120142_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0120142_19	UniRef90	UniRef90_A0A8G1TFU2	NA	NA
UHGV-0120142_19	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-0120142_19	Pfam	PF04448	NA	DUF551
UHGV-0120142_19	Structural annotation	NF037951	NA	NA
UHGV-0120142_20	eggNOG-mapper	445972.ANACOL_00166	NA	NA
UHGV-0120142_21	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0120142_21	UniRef90	UniRef90_UPI001D05D528	radical SAM protein	NA
UHGV-0120142_21	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0120142_21	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0120142_21	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0120142_25	PHROG	phrog_874	NA	unknown function
UHGV-0120142_25	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0120142_25	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0120142_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0120142_26	eggNOG-mapper	1304866.K413DRAFT_1210	NA	NA
UHGV-0120142_26	Structural annotation	NF041909	NA	NA
UHGV-0120142_28	PHROG	phrog_19011	NA	unknown function
UHGV-0120142_28	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0120142_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120142_29	Structural annotation	PF04545	NA	NA
UHGV-0120142_31	PHROG	phrog_1758	acetyltransferase	other
UHGV-0120142_31	UniRef90	UniRef90_A0A239X206	NA	NA
UHGV-0120142_31	eggNOG-mapper	1336234.JAGN01000004_gene506	acetyltransferase	NA
UHGV-0120142_31	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0120142_31	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-0120142_33	PHROG	phrog_33130	NA	unknown function
UHGV-0120142_33	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0120142_33	Structural annotation	PF10922	NA	NA
UHGV-0120142_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120142_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0120142_34	UniRef90	UniRef90_A0A1C7I418	Terminase	NA
UHGV-0120142_34	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0120142_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0120142_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0120142_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0120142_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120142_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120142_34	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0120142_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0120142_35	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0120142_35	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0120142_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0120142_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0120142_36	UniRef90	UniRef90_A0A1C7I784	Phage capsid protein	NA
UHGV-0120142_36	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0120142_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0120142_36	COG	COG2369	NA	NA
UHGV-0120142_36	Structural annotation	PF06152	NA	NA
UHGV-0120142_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0120142_37	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0120142_37	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0120142_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0120142_38	PHROG	phrog_247	major head protein	head and packaging
UHGV-0120142_38	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0120142_38	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0120142_38	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0120142_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0120142_39	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0120142_40	PHROG	phrog_1233	NA	unknown function
UHGV-0120142_40	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0120142_40	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0120142_41	PHROG	phrog_3366	NA	unknown function
UHGV-0120142_41	eggNOG-mapper	33035.JPJF01000106_gene3129	NA	NA
UHGV-0120142_41	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0120142_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0120142_42	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0120142_42	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0120142_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0120142_42	Structural annotation	PF11114	NA	NA
UHGV-0120142_43	PHROG	phrog_3266	tail completion	connector
UHGV-0120142_43	eggNOG-mapper	33035.JPJF01000106_gene3127	NA	NA
UHGV-0120142_43	Structural annotation	PF12691	NA	NA
UHGV-0120142_44	PHROG	phrog_3099	NA	unknown function
UHGV-0120142_44	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0120142_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0120142_45	PHROG	phrog_11299	NA	unknown function
UHGV-0120142_45	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0120142_45	Structural annotation	PF10666	NA	NA
UHGV-0120142_46	PHROG	phrog_706	NA	unknown function
UHGV-0120142_46	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0120142_46	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0120142_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0120142_46	Structural annotation	PF06854	NA	NA
UHGV-0120142_47	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-0120142_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0120142_47	UniRef90	UniRef90_UPI000E5088A1	apolipoprotein A1/A4/E domain-containing protein	NA
UHGV-0120142_47	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-0120142_47	COG	COG1511	NA	NA
UHGV-0120142_48	PHROG	phrog_1194	NA	unknown function
UHGV-0120142_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0120142_49	PHROG	phrog_6616	tail protein	tail
UHGV-0120142_49	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0120142_49	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0120142_49	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0120142_50	PHROG	phrog_18444	NA	unknown function
UHGV-0120142_50	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0120142_50	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0120142_51	eggNOG-mapper	1463856.JOHY01000008_gene806	Parallel beta-helix repeats	NA
UHGV-0120142_51	COG	COG5434	Polygalacturonase	NA
UHGV-0120142_51	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0120142_52	PHROG	phrog_16573	NA	unknown function
UHGV-0120142_52	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA