UHGV-0120259

Genome information

Genome length 29,089 bps

CDS count 40

Completeness 75.87% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120259
vOTU ID	vOTU-018753
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_294022
BioSample	SAMEA4431904
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.22
Jumbo phage	No

Genome content
Genome length	29,089 bps
GC content	51.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	88.61%
Average CDS length	646.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120259_1	PHROG	phrog_469	tail protein	tail
UHGV-0120259_1	UniRef90	UniRef90_A0A443WQ78	Kinase	NA
UHGV-0120259_1	eggNOG-mapper	571.MC52_01330	cellulase activity	NA
UHGV-0120259_1	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0120259_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0120259_1	Structural annotation	PF13550, NF040662, TIGR01683, COG2104	NA	NA
UHGV-0120259_2	PHROG	phrog_329	minor tail protein	tail
UHGV-0120259_2	UniRef90	UniRef90_A0A330XBC2	Nitrite transporter	NA
UHGV-0120259_2	eggNOG-mapper	1225184.ALXE01000018_gene3828	NA	NA
UHGV-0120259_2	Structural annotation	TIGR02219	NA	NA
UHGV-0120259_3	PHROG	phrog_396	minor tail protein	tail
UHGV-0120259_3	UniRef90	UniRef90_A0A377ZDS5	ArsR family transcriptional regulator	NA
UHGV-0120259_3	eggNOG-mapper	371042.NG99_23805	NA	NA
UHGV-0120259_3	Pfam	PF08875	NA	DUF1833
UHGV-0120259_3	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0120259_4	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0120259_4	UniRef90	UniRef90_A0A377Z7R0	Alkanesulfonate ABC transporter permease	NA
UHGV-0120259_4	eggNOG-mapper	1028307.EAE_21020	NA	NA
UHGV-0120259_4	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0120259_5	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0120259_5	UniRef90	UniRef90_A0A8A9WZS7	Phage tail tape measure protein	NA
UHGV-0120259_5	eggNOG-mapper	932213.SPM24T3_24002	lytic transglycosylase activity	NA
UHGV-0120259_5	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0120259_5	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0120259_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0120259_6	PHROG	phrog_2320	NA	unknown function
UHGV-0120259_6	UniRef90	UniRef90_UPI000469FE81	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0120259_6	eggNOG-mapper	371042.NG99_26645	NA	NA
UHGV-0120259_7	PHROG	phrog_337	tail protein	tail
UHGV-0120259_7	UniRef90	UniRef90_A0A8A7GDE6	Phage tail protein	NA
UHGV-0120259_7	eggNOG-mapper	932213.SPM24T3_24201	NA	NA
UHGV-0120259_8	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0120259_8	UniRef90	UniRef90_UPI0005165ADE	phage tail assembly chaperone family protein, TAC	NA
UHGV-0120259_8	eggNOG-mapper	640513.Entas_3070	Phage tail assembly chaperone, TAC	NA
UHGV-0120259_8	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0120259_8	Structural annotation	PF16459	NA	NA
UHGV-0120259_9	PHROG	phrog_158	major tail protein	tail
UHGV-0120259_9	UniRef90	UniRef90_A0A8F4G6C2	Phage tail protein	NA
UHGV-0120259_9	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0120259_9	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0120259_9	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0120259_10	PHROG	phrog_78	tail terminator	connector
UHGV-0120259_10	UniRef90	UniRef90_A0A1X9TNY6	NA	NA
UHGV-0120259_10	eggNOG-mapper	10742.Q9MCV0_BPHK0	NA	NA
UHGV-0120259_10	Pfam	PF11367	NA	DUF3168
UHGV-0120259_10	Structural annotation	PF11367	NA	NA
UHGV-0120259_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0120259_11	UniRef90	UniRef90_UPI001F326D52	HK97 gp10 family phage protein	NA
UHGV-0120259_11	eggNOG-mapper	1147150.K7PM60_9CAUD	exonuclease activity	NA
UHGV-0120259_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0120259_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0120259_11	Structural annotation	TIGR01725	NA	NA
UHGV-0120259_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-0120259_12	UniRef90	UniRef90_A0A7I0E463	Head-tail adaptor protein	NA
UHGV-0120259_12	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0120259_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0120259_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0120259_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0120259_13	PHROG	phrog_2612	NA	unknown function
UHGV-0120259_13	UniRef90	UniRef90_A0A8F4G2J7	HU family DNA-binding protein	NA
UHGV-0120259_13	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0120259_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0120259_14	UniRef90	UniRef90_A0A3S4K328	Phage protein DNA packaging protein	NA
UHGV-0120259_14	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0120259_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0120259_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0120259_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0120259_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0120259_15	UniRef90	UniRef90_A0A133LFJ6	Phage major capsid protein, HK97 family	NA
UHGV-0120259_15	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0120259_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0120259_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0120259_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120259_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120259_16	KOfam	K06904	NA	NA
UHGV-0120259_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0120259_16	UniRef90	UniRef90_A0A133LFS7	Phage prohead protease, HK97 family	NA
UHGV-0120259_16	eggNOG-mapper	667121.ET1_08_01070	Prohead protease	NA
UHGV-0120259_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0120259_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0120259_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0120259_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0120259_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0120259_17	UniRef90	UniRef90_A0A7I7A5G0	Portal protein	NA
UHGV-0120259_17	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0120259_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0120259_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0120259_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0120259_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0120259_18	PHROG	phrog_7105	NA	unknown function
UHGV-0120259_18	UniRef90	UniRef90_A0A486H341	Membrane protein	NA
UHGV-0120259_18	eggNOG-mapper	520999.PROVALCAL_02013	NA	NA
UHGV-0120259_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0120259_19	UniRef90	UniRef90_A0A3G2FCW0	Terminase large subunit	NA
UHGV-0120259_19	eggNOG-mapper	741091.Rahaq_1806	terminase	NA
UHGV-0120259_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0120259_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0120259_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0120259_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0120259_20	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0120259_20	UniRef90	UniRef90_A0A377ZT15	Terminase	NA
UHGV-0120259_20	eggNOG-mapper	1410619.SRDD_27410	Phage terminase, small subunit	NA
UHGV-0120259_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0120259_20	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0120259_20	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0120259_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0120259_21	PHROG	phrog_4160	NA	unknown function
UHGV-0120259_21	UniRef90	UniRef90_UPI001E373CDE	HNH endonuclease	NA
UHGV-0120259_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0120259_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120259_22	UniRef90	UniRef90_A0A377Z6P6	DNAse	NA
UHGV-0120259_22	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0120259_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120259_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120259_22	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0120259_23	PHROG	phrog_5415	NA	unknown function
UHGV-0120259_24	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0120259_24	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0120259_25	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0120259_25	PHROG	phrog_181	endolysin	lysis
UHGV-0120259_25	UniRef90	UniRef90_A0A163VDW5	Lytic enzyme	NA
UHGV-0120259_25	eggNOG-mapper	1399774.JDWH01000016_gene3440	Chitinase class I	NA
UHGV-0120259_25	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0120259_25	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0120259_25	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0120259_26	PHROG	phrog_217	holin	lysis
UHGV-0120259_26	UniRef90	UniRef90_A0A168RD66	Membrane protein	NA
UHGV-0120259_26	eggNOG-mapper	573.JG24_10930	Putative 3TM holin, Phage_holin_3	NA
UHGV-0120259_26	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0120259_27	PHROG	phrog_198	holin	lysis
UHGV-0120259_27	UniRef90	UniRef90_A0A0F6TUZ0	Membrane protein	NA
UHGV-0120259_27	eggNOG-mapper	1399774.JDWH01000016_gene3442	Putative phage holin	NA
UHGV-0120259_27	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0120259_27	Structural annotation	PF16931	NA	NA
UHGV-0120259_29	KOfam	K07080	NA	NA
UHGV-0120259_29	PHROG	phrog_6856	NA	unknown function
UHGV-0120259_29	UniRef90	UniRef90_A0A514ES27	TRAP transporter solute receptor, TAXI family	NA
UHGV-0120259_29	eggNOG-mapper	460265.Mnod_4237	NMT1-like family	NA
UHGV-0120259_29	Pfam	PF16868	NMT1-like family	NMT1_3
UHGV-0120259_29	COG	COG2358	NA	NA
UHGV-0120259_29	Structural annotation	PF16868, MF_00079, TIGR02122, COG2358	NA	NA
UHGV-0120259_30	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0120259_30	UniRef90	UniRef90_A0A0J2GSI8	NA	NA
UHGV-0120259_30	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0120259_30	Pfam	PF06576	NA	DUF1133
UHGV-0120259_30	Structural annotation	PF06576	NA	NA
UHGV-0120259_31	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120259_31	UniRef90	UniRef90_A0A1X9TPI1	NA	NA
UHGV-0120259_31	eggNOG-mapper	35703.DQ02_24170	NA	NA
UHGV-0120259_31	Pfam	PF06147	NA	DUF968
UHGV-0120259_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120259_31	Structural annotation	PF06147	NA	NA
UHGV-0120259_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0120259_32	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0120259_32	UniRef90	UniRef90_A0A486QS57	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0120259_32	eggNOG-mapper	1166130.H650_06940	Endodeoxyribonuclease RusA	NA
UHGV-0120259_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0120259_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0120259_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0120259_33	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-0120259_33	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0120259_33	UniRef90	UniRef90_A0A377XFY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0120259_33	eggNOG-mapper	371042.NG99_23650	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0120259_33	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-0120259_33	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0120259_33	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0120259_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0120259_33	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0120259_34	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120259_34	UniRef90	UniRef90_A0A7U7F836	Phg_2220_C domain-containing protein	NA
UHGV-0120259_34	eggNOG-mapper	1399774.JDWH01000016_gene3451	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0120259_34	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0120259_34	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0120259_34	Structural annotation	PF13463, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0120259_35	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0120259_35	eggNOG-mapper	399742.Ent638_2618	NA	NA
UHGV-0120259_35	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0120259_35	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0120259_35	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0120259_36	KOfam	K22302	dicC; transcriptional repressor of cell division inhibition gene dicB	NA
UHGV-0120259_36	UniRef90	UniRef90_A0A7Z7ZZV1	Cell division protein	NA
UHGV-0120259_36	eggNOG-mapper	1524467.IV04_21630	DNA-binding transcriptional regulator Cro	NA
UHGV-0120259_36	Pfam	PF14549	DNA-binding transcriptional regulator Cro	P22_Cro
UHGV-0120259_36	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-0120259_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0120259_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0120259_37	UniRef90	UniRef90_A0A2J4YI15	DNA-binding protein (Fragment)	NA
UHGV-0120259_37	eggNOG-mapper	1484157.PSNIH2_07695	Helix-turn-helix domain	NA
UHGV-0120259_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120259_37	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0120259_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0120259_37	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF007257, COG2932	NA	NA
UHGV-0120259_38	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-0120259_38	PHROG	phrog_724	exonuclease recombination-associated	DNA, RNA and nucleotide metabolism
UHGV-0120259_38	UniRef90	UniRef90_A0A3S4JGA2	Recombination-associated protein RdgC	NA
UHGV-0120259_38	eggNOG-mapper	1115512.EH105704_01_01540	May be involved in recombination	NA
UHGV-0120259_38	Pfam	PF04381	Putative exonuclease, RdgC	RdgC
UHGV-0120259_38	NCBIFam	NF001462.0	recombination-associated protein RdgC	NA
UHGV-0120259_38	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-0120259_38	HAMAP	MF_00194	Recombination-associated protein RdgC [rdgC]	NA
UHGV-0120259_38	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-0120259_39	PHROG	phrog_15091	NA	unknown function
UHGV-0120259_40	PHROG	phrog_25613	NA	unknown function
UHGV-0120259_40	UniRef90	UniRef90_UPI001913E043	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-0120259_40	eggNOG-mapper	573.JG24_10860	NA	NA