UHGV-0120333

Genome information

Genome length 37,703 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120333
vOTU ID	vOTU-071464
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_289088
BioSample	SAMEA4378257
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.83
Jumbo phage	No

Genome content
Genome length	37,703 bps
GC content	38.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.94%
Average CDS length	637.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120333_1	eggNOG-mapper	1121115.AXVN01000097_gene3797	Toxin SymE, type I toxin-antitoxin system	NA
UHGV-0120333_2	eggNOG-mapper	1410632.JHWW01000001_gene951	tRNA (Uracil-5-)-methyltransferase	NA
UHGV-0120333_2	COG	COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	NA
UHGV-0120333_3	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0120333_3	PHROG	phrog_35436	amidase	lysis
UHGV-0120333_3	UniRef90	UniRef90_UPI00041018D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0120333_3	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0120333_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0120333_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0120333_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0120333_3	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0120333_4	PHROG	phrog_18218	NA	unknown function
UHGV-0120333_4	UniRef90	UniRef90_A0A3E4LX14	Ribonuclease	NA
UHGV-0120333_4	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0120333_4	Structural annotation	PF06946	NA	NA
UHGV-0120333_5	PHROG	phrog_1863	NA	unknown function
UHGV-0120333_5	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0120333_5	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0120333_6	PHROG	phrog_3639	minor tail protein	tail
UHGV-0120333_8	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0120333_8	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0120333_8	eggNOG-mapper	903814.ELI_1315	Collagen triple helix repeat (20 copies)	NA
UHGV-0120333_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0120333_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0120333_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0120333_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0120333_9	UniRef90	UniRef90_UPI0005A8CFC8	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0120333_9	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0120333_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0120333_9	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0120333_10	PHROG	phrog_5339	virion structural protein	head and packaging
UHGV-0120333_10	UniRef90	UniRef90_A0A0U2WUF0	Phage-related protein	NA
UHGV-0120333_10	eggNOG-mapper	1499683.CCFF01000017_gene2563	COG NOG18825 non supervised orthologous group	NA
UHGV-0120333_10	Structural annotation	PF21567	NA	NA
UHGV-0120333_11	PHROG	phrog_36410	NA	unknown function
UHGV-0120333_11	UniRef90	UniRef90_A0A373JCA8	Phage tail family protein	NA
UHGV-0120333_11	eggNOG-mapper	33035.JPJF01000033_gene2264	PFAM Phage tail protein	NA
UHGV-0120333_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0120333_11	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0120333_12	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0120333_12	PHROG	phrog_5218	NA	unknown function
UHGV-0120333_12	UniRef90	UniRef90_A0A373J9F4	Phage tail tape measure protein	NA
UHGV-0120333_12	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0120333_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0120333_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0120333_13	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120333_13	UniRef90	UniRef90_A0A373JAG1	HNHc domain-containing protein	NA
UHGV-0120333_13	eggNOG-mapper	315730.BcerKBAB4_3417	regulation of methylation-dependent chromatin silencing	NA
UHGV-0120333_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120333_13	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0120333_13	Structural annotation	PF05766	NA	NA
UHGV-0120333_14	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0120333_14	UniRef90	UniRef90_A0A373JB13	Phage tail tape measure protein	NA
UHGV-0120333_14	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-0120333_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0120333_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0120333_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0120333_15	PHROG	phrog_706	NA	unknown function
UHGV-0120333_15	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0120333_15	eggNOG-mapper	33035.JPJF01000033_gene2266	COG NOG24969 non supervised orthologous group	NA
UHGV-0120333_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0120333_15	Structural annotation	PF06854	NA	NA
UHGV-0120333_16	PHROG	phrog_4450	NA	unknown function
UHGV-0120333_16	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-0120333_16	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0120333_16	Pfam	PF20378	NA	DUF6673
UHGV-0120333_17	PHROG	phrog_3099	NA	unknown function
UHGV-0120333_17	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0120333_17	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0120333_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0120333_18	PHROG	phrog_3266	tail completion	connector
UHGV-0120333_18	UniRef90	UniRef90_A0A2N2DTS1	Chloramphenicol resistance protein	NA
UHGV-0120333_18	eggNOG-mapper	33035.JPJF01000033_gene2269	NA	NA
UHGV-0120333_18	Structural annotation	PF12691	NA	NA
UHGV-0120333_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0120333_19	UniRef90	UniRef90_A0A373JC64	Capsid protein	NA
UHGV-0120333_19	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0120333_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0120333_19	Structural annotation	PF11114	NA	NA
UHGV-0120333_20	PHROG	phrog_3366	NA	unknown function
UHGV-0120333_20	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0120333_20	Pfam	PF20536	NA	DUF6751
UHGV-0120333_20	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0120333_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0120333_21	eggNOG-mapper	663278.Ethha_0495	NA	NA
UHGV-0120333_21	Structural annotation	PF05135	NA	NA
UHGV-0120333_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0120333_22	eggNOG-mapper	742765.HMPREF9457_02127	NA	NA
UHGV-0120333_22	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0120333_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0120333_23	UniRef90	UniRef90_UPI001EE04F4B	phage scaffolding protein	NA
UHGV-0120333_23	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0120333_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0120333_23	Structural annotation	PF06810	NA	NA
UHGV-0120333_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0120333_24	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0120333_24	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0120333_24	Structural annotation	PF14359	NA	NA
UHGV-0120333_25	PHROG	phrog_1048	NA	unknown function
UHGV-0120333_25	UniRef90	UniRef90_A0A395V4Z5	NA	NA
UHGV-0120333_25	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0120333_25	Pfam	PF11195	NA	DUF2829
UHGV-0120333_25	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0120333_25	Structural annotation	PF11195	NA	NA
UHGV-0120333_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0120333_28	UniRef90	UniRef90_A0A373JAB0	Minor capsid protein	NA
UHGV-0120333_28	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-0120333_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0120333_28	COG	COG2369	NA	NA
UHGV-0120333_28	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0120333_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0120333_29	UniRef90	UniRef90_A0A373JBS6	Phage capsid protein	NA
UHGV-0120333_29	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0120333_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0120333_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120333_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0120333_30	UniRef90	UniRef90_A0A373J9L3	PBSX family phage terminase large subunit	NA
UHGV-0120333_30	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0120333_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0120333_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120333_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120333_30	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0120333_31	PHROG	phrog_2412	NA	unknown function
UHGV-0120333_31	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0120333_31	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0120333_32	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0120333_32	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0120333_32	UniRef90	UniRef90_A0A373JC73	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0120333_32	eggNOG-mapper	411470.RUMGNA_03915	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0120333_32	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0120333_32	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0120333_32	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0120333_33	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0120333_33	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0120333_33	UniRef90	UniRef90_A0A373J9H4	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0120333_33	eggNOG-mapper	411469.EUBHAL_02628	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0120333_33	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0120333_33	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0120333_33	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0120333_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120333_34	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-0120333_34	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0120333_34	Pfam	PF07374	NA	DUF1492
UHGV-0120333_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0120333_34	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0120333_35	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0120333_36	PHROG	phrog_25754	NA	unknown function
UHGV-0120333_36	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-0120333_36	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0120333_38	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120333_38	UniRef90	UniRef90_A0A373IND1	NA	NA
UHGV-0120333_38	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0120333_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0120333_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120333_38	Structural annotation	PF14297	NA	NA
UHGV-0120333_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0120333_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120333_39	UniRef90	UniRef90_UPI001C10F0CE	recombinase RecT	NA
UHGV-0120333_39	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0120333_39	Pfam	PF03837	RecT family	RecT
UHGV-0120333_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0120333_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0120333_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0120333_40	PHROG	phrog_674	NA	unknown function
UHGV-0120333_40	UniRef90	UniRef90_A0A844E1E5	NA	NA
UHGV-0120333_40	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0120333_40	Pfam	PF07083	NA	DUF1351
UHGV-0120333_40	Structural annotation	PF07083	NA	NA
UHGV-0120333_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120333_41	UniRef90	UniRef90_A0A844E6Y4	Recombinase	NA
UHGV-0120333_41	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0120333_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0120333_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0120333_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0120333_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0120333_44	PHROG	phrog_6058	NA	unknown function
UHGV-0120333_44	UniRef90	UniRef90_A0A374E7W1	XRE family transcriptional regulator	NA
UHGV-0120333_44	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0120333_44	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0120333_44	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0120333_45	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0120333_45	UniRef90	UniRef90_A0A373ILI2	Phage repressor protein	NA
UHGV-0120333_45	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0120333_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0120333_45	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0120333_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0120333_45	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0120333_46	eggNOG-mapper	748247.AZKH_1559	NA	NA
UHGV-0120333_46	Structural annotation	PF04450, COG3975	NA	NA
UHGV-0120333_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120333_49	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0120333_49	UniRef90	UniRef90_UPI001C1244F8	helix-turn-helix transcriptional regulator	NA
UHGV-0120333_49	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0120333_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120333_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120333_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0120333_50	UniRef90	UniRef90_UPI001C10E005	helix-turn-helix domain-containing protein	NA
UHGV-0120333_50	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0120333_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0120333_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0120333_50	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0120333_51	PHROG	phrog_87	metallo-protease	other
UHGV-0120333_51	UniRef90	UniRef90_A0A373INP4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0120333_51	eggNOG-mapper	1121115.AXVN01000006_gene2176	NA	NA
UHGV-0120333_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0120333_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0120333_52	eggNOG-mapper	742765.HMPREF9457_02092	NA	NA
UHGV-0120333_52	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0120333_53	KOfam	K14059	int; integrase	NA
UHGV-0120333_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0120333_53	UniRef90	UniRef90_A0A564WTT7	Site-specific tyrosine recombinase XerC	NA
UHGV-0120333_53	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0120333_53	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0120333_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0120333_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120333_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120333_53	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA