UHGV-0120334

Genome information

Genome length 39,153 bps

CDS count 57

Completeness 99.95% (high-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120334
vOTU ID	vOTU-071465
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_289087
BioSample	SAMEA4378257
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.3
Jumbo phage	No

Genome content
Genome length	39,153 bps
GC content	38.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.54%
Average CDS length	631.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120334_2	KOfam	K14059	int; integrase	NA
UHGV-0120334_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0120334_2	UniRef90	UniRef90_UPI00189A780D	tyrosine-type recombinase/integrase	NA
UHGV-0120334_2	eggNOG-mapper	411460.RUMTOR_02457	NA	NA
UHGV-0120334_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0120334_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120334_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120334_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0120334_3	PHROG	phrog_27136	NA	unknown function
UHGV-0120334_3	UniRef90	UniRef90_UPI000A966D6C	Zn-ribbon domain-containing protein	NA
UHGV-0120334_3	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-0120334_4	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0120334_4	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120334_4	UniRef90	UniRef90_A0A417D3V0	Type I site-specific deoxyribonuclease	NA
UHGV-0120334_4	eggNOG-mapper	1235802.C823_05685	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0120334_4	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0120334_4	COG	COG4748	NA	NA
UHGV-0120334_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0120334_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120334_5	UniRef90	UniRef90_R6YK35	XRE family Transcriptional regulator	NA
UHGV-0120334_5	eggNOG-mapper	1378168.N510_03177	sequence-specific DNA binding	NA
UHGV-0120334_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0120334_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120334_5	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0120334_8	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0120334_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0120334_8	UniRef90	UniRef90_UPI00156E0BE9	tyrosine-type recombinase/integrase	NA
UHGV-0120334_8	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0120334_8	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0120334_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120334_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0120334_9	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0120334_9	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0120334_9	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0120334_9	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0120334_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0120334_10	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0120334_10	UniRef90	UniRef90_A0A564SBT3	Phage antirepressor protein KilAC domain protein	NA
UHGV-0120334_10	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0120334_10	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0120334_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0120334_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0120334_10	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0120334_11	PHROG	phrog_6058	NA	unknown function
UHGV-0120334_11	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0120334_11	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-0120334_11	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0120334_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0120334_15	UniRef90	UniRef90_UPI00051BA35F	siphovirus Gp157 family protein	NA
UHGV-0120334_15	eggNOG-mapper	33035.JPJF01000122_gene2464	Siphovirus Gp157	NA
UHGV-0120334_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0120334_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0120334_16	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120334_16	UniRef90	UniRef90_A0A373IL66	Single-stranded DNA-binding protein	NA
UHGV-0120334_16	eggNOG-mapper	33035.JPJF01000122_gene2463	ERF superfamily	NA
UHGV-0120334_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-0120334_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120334_16	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0120334_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0120334_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120334_17	UniRef90	UniRef90_UPI00156F1EC1	single-stranded DNA-binding protein	NA
UHGV-0120334_17	eggNOG-mapper	500632.CLONEX_02624	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0120334_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0120334_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0120334_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120334_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0120334_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0120334_18	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0120334_18	UniRef90	UniRef90_UPI000B16C6DA	DnaD domain protein	NA
UHGV-0120334_18	eggNOG-mapper	1140001.I571_01717	DnaD domain protein	NA
UHGV-0120334_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120334_18	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0120334_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0120334_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0120334_19	UniRef90	UniRef90_A0A373MWF0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0120334_19	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0120334_19	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0120334_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0120334_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0120334_19	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0120334_20	eggNOG-mapper	411470.RUMGNA_02044	NA	NA
UHGV-0120334_20	Structural annotation	PF02185	NA	NA
UHGV-0120334_22	PHROG	phrog_31900	NA	unknown function
UHGV-0120334_22	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0120334_23	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0120334_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120334_24	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-0120334_24	Pfam	PF07374	NA	DUF1492
UHGV-0120334_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0120334_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0120334_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0120334_25	UniRef90	UniRef90_A0A415L5B5	Terminase small subunit	NA
UHGV-0120334_25	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0120334_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0120334_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0120334_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0120334_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120334_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0120334_26	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-0120334_26	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0120334_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120334_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0120334_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0120334_27	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0120334_27	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0120334_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0120334_28	PHROG	phrog_25639	NA	unknown function
UHGV-0120334_28	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0120334_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0120334_29	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0120334_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0120334_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0120334_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0120334_29	Structural annotation	PF06152	NA	NA
UHGV-0120334_31	PHROG	phrog_1048	NA	unknown function
UHGV-0120334_31	UniRef90	UniRef90_A0A417V882	NA	NA
UHGV-0120334_31	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0120334_31	Pfam	PF11195	NA	DUF2829
UHGV-0120334_31	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0120334_31	Structural annotation	PF11195	NA	NA
UHGV-0120334_32	PHROG	phrog_918	NA	unknown function
UHGV-0120334_32	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0120334_32	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0120334_32	Pfam	PF19791	NA	DUF6275
UHGV-0120334_32	Structural annotation	PF19791	NA	NA
UHGV-0120334_33	PHROG	phrog_13199	NA	unknown function
UHGV-0120334_33	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0120334_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0120334_34	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0120334_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0120334_35	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0120334_35	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0120334_35	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0120334_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0120334_36	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0120334_37	PHROG	phrog_8710	NA	unknown function
UHGV-0120334_37	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0120334_37	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0120334_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0120334_38	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0120334_39	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0120334_39	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0120334_39	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0120334_39	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0120334_39	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0120334_40	PHROG	phrog_820	major tail protein	tail
UHGV-0120334_40	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0120334_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0120334_41	PHROG	phrog_8300	NA	unknown function
UHGV-0120334_41	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0120334_41	Structural annotation	PF06854	NA	NA
UHGV-0120334_42	PHROG	phrog_8355	NA	unknown function
UHGV-0120334_42	UniRef90	UniRef90_UPI000E439FD7	Gp15 family bacteriophage protein	NA
UHGV-0120334_42	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0120334_43	PHROG	phrog_3845	NA	unknown function
UHGV-0120334_43	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0120334_43	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0120334_43	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0120334_43	Structural annotation	PF13248	NA	NA
UHGV-0120334_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0120334_44	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0120334_44	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0120334_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0120334_44	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0120334_45	PHROG	phrog_1194	NA	unknown function
UHGV-0120334_45	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0120334_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0120334_46	PHROG	phrog_6616	tail protein	tail
UHGV-0120334_46	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0120334_46	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0120334_46	COG	COG4926	Phage-related protein	NA
UHGV-0120334_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0120334_49	PHROG	phrog_16164	NA	unknown function
UHGV-0120334_49	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0120334_49	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0120334_50	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0120334_51	PHROG	phrog_2310	NA	unknown function
UHGV-0120334_52	PHROG	phrog_4105	NA	unknown function
UHGV-0120334_52	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0120334_53	PHROG	phrog_1129	holin	lysis
UHGV-0120334_53	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0120334_53	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0120334_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0120334_53	Structural annotation	PF16079	NA	NA
UHGV-0120334_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0120334_54	PHROG	phrog_35436	amidase	lysis
UHGV-0120334_54	UniRef90	UniRef90_UPI001D016E56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0120334_54	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0120334_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0120334_54	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0120334_54	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0120334_55	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0120334_56	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-0120334_56	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0120334_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0120334_56	Structural annotation	PF13443, NF000090, COG3655	NA	NA