UHGV-0120410

Genome information

Genome length 31,958 bps

CDS count 48

Completeness 90.83% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120410
vOTU ID	vOTU-067908
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295620
BioSample	SAMEA4431936
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.96
Jumbo phage	No

Genome content
Genome length	31,958 bps
GC content	39.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.27%
Average CDS length	610.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120410_1	PHROG	phrog_5302	tail protein	tail
UHGV-0120410_1	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0120410_1	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0120410_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0120410_1	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0120410_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0120410_2	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0120410_2	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0120410_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0120410_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0120410_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120410_3	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0120410_3	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0120410_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0120410_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0120410_4	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0120410_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0120410_4	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0120410_4	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0120410_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0120410_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0120410_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0120410_5	Structural annotation	PF11836	NA	NA
UHGV-0120410_6	PHROG	phrog_88	major tail protein	tail
UHGV-0120410_6	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0120410_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0120410_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0120410_7	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0120410_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0120410_7	Structural annotation	TIGR01725	NA	NA
UHGV-0120410_8	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0120410_9	PHROG	phrog_19734	NA	unknown function
UHGV-0120410_9	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0120410_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0120410_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0120410_10	PHROG	phrog_749	NA	unknown function
UHGV-0120410_10	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0120410_10	eggNOG-mapper	1450694.BTS2_0540	NA	NA
UHGV-0120410_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0120410_11	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0120410_11	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0120410_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0120410_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0120410_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120410_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120410_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0120410_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0120410_12	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0120410_12	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0120410_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0120410_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0120410_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0120410_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0120410_13	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0120410_13	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0120410_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0120410_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0120410_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0120410_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0120410_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0120410_14	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0120410_14	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0120410_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0120410_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0120410_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0120410_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0120410_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0120410_15	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0120410_15	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0120410_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0120410_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0120410_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120410_16	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0120410_16	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0120410_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120410_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120410_17	Structural annotation	TIGR01636	NA	NA
UHGV-0120410_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120410_18	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0120410_18	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0120410_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120410_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120410_21	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0120410_21	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0120410_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120410_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120410_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0120410_23	COG	COG0073	tRNA-binding EMAP/Myf domain	NA
UHGV-0120410_27	Structural annotation	PF18337, MF_00754, TIGR00739, COG1862	NA	NA
UHGV-0120410_29	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0120410_29	Structural annotation	PF15597	NA	NA
UHGV-0120410_30	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120410_30	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0120410_30	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0120410_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120410_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120410_30	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0120410_31	PHROG	phrog_824	NA	unknown function
UHGV-0120410_31	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0120410_31	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0120410_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0120410_31	Structural annotation	PF08774	NA	NA
UHGV-0120410_32	PHROG	phrog_24518	NA	unknown function
UHGV-0120410_32	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0120410_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0120410_34	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0120410_34	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0120410_34	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0120410_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0120410_34	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0120410_34	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0120410_34	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0120410_38	PHROG	phrog_6058	NA	unknown function
UHGV-0120410_38	Structural annotation	NF033787	NA	NA
UHGV-0120410_39	PHROG	phrog_8684	NA	unknown function
UHGV-0120410_39	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0120410_39	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0120410_39	Pfam	PF09643	YopX protein	YopX
UHGV-0120410_39	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0120410_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0120410_41	PHROG	phrog_585	NA	unknown function
UHGV-0120410_41	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0120410_41	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0120410_41	Pfam	PF10711	NA	DUF2513
UHGV-0120410_41	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0120410_43	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0120410_43	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0120410_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0120410_43	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0120410_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120410_44	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0120410_44	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0120410_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120410_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120410_44	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0120410_45	PHROG	phrog_1914	NA	unknown function
UHGV-0120410_45	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0120410_45	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0120410_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0120410_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0120410_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0120410_46	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0120410_46	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0120410_46	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0120410_47	KOfam	K14059	int; integrase	NA
UHGV-0120410_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0120410_47	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0120410_47	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0120410_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120410_47	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0120410_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0120410_48	eggNOG-mapper	1321372.AQQB01000002_gene484	NA	NA