UHGV-0120507

Genome information

Genome length 36,677 bps

CDS count 56

Completeness 88.25% (medium-quality)

geNomad score 0.9652

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120507
vOTU ID	vOTU-023297
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_297752
BioSample	SAMEA4431893
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9652
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.54
Jumbo phage	No

Genome content
Genome length	36,677 bps
GC content	45.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.47%
Average CDS length	623.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120507_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0120507_2	PHROG	phrog_894	endolysin	lysis
UHGV-0120507_2	UniRef90	UniRef90_A0A1Q6R3X6	Peptidase_M15_3 domain-containing protein	NA
UHGV-0120507_2	eggNOG-mapper	868595.Desca_1639	Peptidase M15A	NA
UHGV-0120507_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0120507_2	COG	COG3108	NA	NA
UHGV-0120507_2	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0120507_3	UniRef90	UniRef90_R6X5E0	Holin domain protein	NA
UHGV-0120507_3	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0120507_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0120507_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0120507_4	PHROG	phrog_2837	tail protein	tail
UHGV-0120507_4	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0120507_4	Pfam	PF14301	NA	DUF4376
UHGV-0120507_4	Structural annotation	PF14301, COG1382	NA	NA
UHGV-0120507_6	PHROG	phrog_33356	NA	unknown function
UHGV-0120507_6	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-0120507_7	PHROG	phrog_6061	NA	unknown function
UHGV-0120507_8	PHROG	phrog_2427	NA	unknown function
UHGV-0120507_9	PHROG	phrog_1330	tail protein	tail
UHGV-0120507_9	eggNOG-mapper	706434.HMPREF9429_00513	domain protein	NA
UHGV-0120507_9	COG	COG1511	NA	NA
UHGV-0120507_10	PHROG	phrog_1101	tail protein	tail
UHGV-0120507_10	UniRef90	UniRef90_UPI0003F9E3E7	phage tail protein	NA
UHGV-0120507_10	eggNOG-mapper	1232428.CAVO010000021_gene792	Putative phage tail protein	NA
UHGV-0120507_10	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0120507_10	COG	COG1344	Flagellin and related hook-associated protein FlgL	NA
UHGV-0120507_10	Structural annotation	PF13550, PF02010, MF_04116, NF040662, NF040520, COG4733	NA	NA
UHGV-0120507_11	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0120507_11	PHROG	phrog_329	minor tail protein	tail
UHGV-0120507_11	UniRef90	UniRef90_R6BA09	Cell wall-associated hydrolase	NA
UHGV-0120507_11	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0120507_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0120507_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0120507_11	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0120507_12	PHROG	phrog_778	tail assembly protein	tail
UHGV-0120507_12	UniRef90	UniRef90_R6AUE0	Conserved domain protein	NA
UHGV-0120507_12	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0120507_12	Pfam	PF09931	NA	DUF2163
UHGV-0120507_12	COG	COG5449	NA	NA
UHGV-0120507_12	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0120507_13	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0120507_13	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0120507_13	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0120507_13	Pfam	PF09343	NA	DUF2460
UHGV-0120507_13	COG	COG5448	NA	NA
UHGV-0120507_13	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0120507_14	PHROG	phrog_3547	tail length tape measure protein	tail
UHGV-0120507_14	UniRef90	UniRef90_H1CYW8	Tape measure domain-containing protein	NA
UHGV-0120507_14	eggNOG-mapper	742743.HMPREF9453_00556	tape measure	NA
UHGV-0120507_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0120507_18	Structural annotation	PF19591	NA	NA
UHGV-0120507_19	PHROG	phrog_1407	major tail protein	tail
UHGV-0120507_19	UniRef90	UniRef90_G9YK45	Phage major tail protein, TP901-1 family	NA
UHGV-0120507_19	eggNOG-mapper	861450.HMPREF0080_02054	Phage tail tube protein	NA
UHGV-0120507_19	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0120507_19	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0120507_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0120507_20	Structural annotation	PF16807	NA	NA
UHGV-0120507_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0120507_21	UniRef90	UniRef90_UPI00034E17BA	head-tail adaptor protein	NA
UHGV-0120507_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0120507_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0120507_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0120507_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0120507_22	UniRef90	UniRef90_UPI000F0C32B3	head-tail connector protein	NA
UHGV-0120507_22	eggNOG-mapper	1262914.BN533_00195	Phage gp6-like head-tail connector protein	NA
UHGV-0120507_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0120507_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0120507_22	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0120507_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0120507_23	UniRef90	UniRef90_UPI000F0C831E	phage major capsid protein	NA
UHGV-0120507_23	eggNOG-mapper	1121271.AUCM01000008_gene3245	phage major capsid protein, HK97	NA
UHGV-0120507_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0120507_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0120507_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120507_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120507_24	KOfam	K06904	NA	NA
UHGV-0120507_24	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0120507_24	UniRef90	UniRef90_UPI000F0CB78B	HK97 family phage prohead protease	NA
UHGV-0120507_24	eggNOG-mapper	1392502.JNIO01000008_gene1310	Caudovirus prohead protease	NA
UHGV-0120507_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0120507_24	COG	COG3087	Cell division protein FtsN	NA
UHGV-0120507_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0120507_25	UniRef90	UniRef90_A0A1G3YGW0	Phage portal protein	NA
UHGV-0120507_25	eggNOG-mapper	1121324.CLIT_8c00780	Phage portal protein	NA
UHGV-0120507_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0120507_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0120507_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0120507_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0120507_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0120507_26	UniRef90	UniRef90_A0A316S9R8	Terminase large subunit	NA
UHGV-0120507_26	eggNOG-mapper	1262914.BN533_00200	terminase, large subunit	NA
UHGV-0120507_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0120507_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0120507_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0120507_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0120507_27	UniRef90	UniRef90_A0A1H8BHL1	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0120507_27	eggNOG-mapper	1382315.JPOI01000001_gene285	Phage terminase, small subunit	NA
UHGV-0120507_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0120507_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0120507_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0120507_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0120507_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120507_28	UniRef90	UniRef90_R6IEU0	Holin protein	NA
UHGV-0120507_28	eggNOG-mapper	1262914.BN533_00202	HNH nucleases	NA
UHGV-0120507_28	AcrCatalog	cluster_19695	NA	NA
UHGV-0120507_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120507_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120507_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0120507_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120507_29	Structural annotation	PF05263, MF_00245, TIGR01636, COG1595	NA	NA
UHGV-0120507_31	PHROG	phrog_35896	NA	unknown function
UHGV-0120507_32	PHROG	phrog_36825	NA	unknown function
UHGV-0120507_32	eggNOG-mapper	1262914.BN533_00206	DnaD domain protein	NA
UHGV-0120507_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120507_32	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-0120507_33	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0120507_33	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0120507_33	UniRef90	UniRef90_A0A078M3B1	Beta sliding clamp	NA
UHGV-0120507_33	eggNOG-mapper	1473546.CH76_05045	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0120507_33	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0120507_33	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0120507_33	Structural annotation	PF02768, PF00712, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0120507_37	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0120507_37	COG	COG1388	LysM repeat	NA
UHGV-0120507_37	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0120507_41	PHROG	phrog_585	NA	unknown function
UHGV-0120507_41	UniRef90	UniRef90_UPI001D02D4A3	NA	NA
UHGV-0120507_41	eggNOG-mapper	180332.JTGN01000008_gene4107	NA	NA
UHGV-0120507_41	Pfam	PF10711	NA	DUF2513
UHGV-0120507_41	Structural annotation	PF10711, MF_01819, TIGR04176, COG1695	NA	NA
UHGV-0120507_46	Structural annotation	PF13033	NA	NA
UHGV-0120507_47	UniRef90	UniRef90_UPI00037B7FFB	helix-turn-helix domain-containing protein	NA
UHGV-0120507_47	eggNOG-mapper	1273103.NM10_03301	NA	NA
UHGV-0120507_47	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0120507_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0120507_48	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0120507_48	UniRef90	UniRef90_A0A3C1IP78	XRE family transcriptional regulator	NA
UHGV-0120507_48	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0120507_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120507_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120507_48	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0120507_49	UniRef90	UniRef90_UPI001D0106BA	virulence RhuM family protein	NA
UHGV-0120507_49	eggNOG-mapper	1168034.FH5T_19220	Toxin-antitoxin system, toxin component, Fic	NA
UHGV-0120507_49	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0120507_49	COG	COG3943	NA	NA
UHGV-0120507_49	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0120507_50	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0120507_50	PHROG	phrog_8036	NA	unknown function
UHGV-0120507_50	UniRef90	UniRef90_UPI0005B2EA5A	DNA damage-inducible protein D	NA
UHGV-0120507_50	eggNOG-mapper	537007.BLAHAN_04376	NA	NA
UHGV-0120507_50	AcrCatalog	cluster_17589	NA	NA
UHGV-0120507_50	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0120507_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0120507_50	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0120507_50	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0120507_50	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0120507_51	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0120507_51	PHROG	phrog_8036	NA	unknown function
UHGV-0120507_51	UniRef90	UniRef90_A0A3C1INR2	Damage-inducible protein D	NA
UHGV-0120507_51	eggNOG-mapper	340.xcc-b100_1250	BRO family, N-terminal domain	NA
UHGV-0120507_51	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0120507_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0120507_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0120507_51	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0120507_52	PHROG	phrog_2232	NA	unknown function
UHGV-0120507_52	UniRef90	UniRef90_UPI001887AF7B	NA	NA
UHGV-0120507_52	eggNOG-mapper	1005704.HMPREF9968_1925	NA	NA
UHGV-0120507_52	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0120507_52	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0120507_54	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0120507_54	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0120507_54	UniRef90	UniRef90_A0A3C1ILB9	HicB-like domain-containing protein	NA
UHGV-0120507_54	eggNOG-mapper	335541.Swol_1569	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0120507_54	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0120507_54	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0120507_54	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0120507_55	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0120507_55	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0120507_55	UniRef90	UniRef90_A0A3A9BKS1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0120507_55	eggNOG-mapper	768706.Desor_1928	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0120507_55	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0120507_55	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0120507_55	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0120507_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0120507_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0120507_56	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0120507_56	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0120507_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0120507_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0120507_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0120507_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0120507_56	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA