UHGV-0120538

Genome information

Genome length 30,427 bps

CDS count 53

Completeness 71.69% (medium-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120538
vOTU ID	vOTU-036487
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_288484
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.56
Jumbo phage	No

Genome content
Genome length	30,427 bps
GC content	52.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.18%
Average CDS length	531.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120538_1	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0120538_2	Structural annotation	PF12510	NA	NA
UHGV-0120538_3	PHROG	phrog_20016	NA	unknown function
UHGV-0120538_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0120538_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0120538_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0120538_5	PHROG	phrog_16490	NA	unknown function
UHGV-0120538_5	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0120538_6	PHROG	phrog_22984	NA	unknown function
UHGV-0120538_7	PHROG	phrog_21718	NA	unknown function
UHGV-0120538_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0120538_8	PHROG	phrog_3754	NA	unknown function
UHGV-0120538_8	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0120538_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120538_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120538_11	eggNOG-mapper	1394176.AWUO01000014_gene642	NA	NA
UHGV-0120538_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120538_11	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0120538_12	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0120538_12	PHROG	phrog_6523	endolysin	lysis
UHGV-0120538_12	UniRef90	UniRef90_R5RXG6	Serine-type D-Ala-D-Ala carboxypeptidase	NA
UHGV-0120538_12	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0120538_12	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0120538_12	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0120538_12	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0120538_13	PHROG	phrog_13256	NA	unknown function
UHGV-0120538_13	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0120538_16	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0120538_19	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0120538_19	UniRef90	UniRef90_A0A252F2M2	NA	NA
UHGV-0120538_19	Pfam	PF19789	NA	DUF6273
UHGV-0120538_19	Structural annotation	PF19789	NA	NA
UHGV-0120538_22	Pfam	PF18902	NA	DUF5658
UHGV-0120538_22	Structural annotation	PF18902	NA	NA
UHGV-0120538_25	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0120538_25	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0120538_26	PHROG	phrog_32308	NA	unknown function
UHGV-0120538_26	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0120538_26	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0120538_26	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0120538_27	PHROG	phrog_1194	NA	unknown function
UHGV-0120538_27	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0120538_27	Pfam	PF20458	NA	DUF6711
UHGV-0120538_27	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0120538_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0120538_28	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0120538_28	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0120538_28	COG	COG1511	NA	NA
UHGV-0120538_28	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0120538_29	PHROG	phrog_17658	NA	unknown function
UHGV-0120538_29	UniRef90	UniRef90_A0A316PG91	zinc_ribbon_2 domain-containing protein	NA
UHGV-0120538_29	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0120538_29	Structural annotation	PF18116, COG3402	NA	NA
UHGV-0120538_30	PHROG	phrog_706	NA	unknown function
UHGV-0120538_30	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0120538_30	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0120538_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0120538_30	Structural annotation	PF06854	NA	NA
UHGV-0120538_31	PHROG	phrog_11299	NA	unknown function
UHGV-0120538_31	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0120538_31	Structural annotation	PF10666	NA	NA
UHGV-0120538_32	PHROG	phrog_3099	NA	unknown function
UHGV-0120538_32	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0120538_32	Structural annotation	TIGR02126	NA	NA
UHGV-0120538_33	PHROG	phrog_3266	tail completion	connector
UHGV-0120538_33	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0120538_33	Structural annotation	PF12691	NA	NA
UHGV-0120538_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0120538_34	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0120538_34	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0120538_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0120538_34	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0120538_35	PHROG	phrog_3366	NA	unknown function
UHGV-0120538_35	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0120538_35	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0120538_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0120538_36	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0120538_37	PHROG	phrog_212	major head protein	head and packaging
UHGV-0120538_37	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0120538_37	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0120538_37	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0120538_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0120538_38	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0120538_38	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0120538_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0120538_38	Structural annotation	PF06810	NA	NA
UHGV-0120538_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0120538_39	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0120538_39	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0120538_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0120538_39	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0120538_39	COG	COG2369	NA	NA
UHGV-0120538_39	Structural annotation	PF06152	NA	NA
UHGV-0120538_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0120538_40	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0120538_40	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0120538_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120538_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0120538_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120538_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0120538_41	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0120538_41	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0120538_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0120538_41	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0120538_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120538_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120538_41	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0120538_43	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0120538_43	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0120538_43	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0120538_43	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0120538_43	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0120538_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0120538_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0120538_43	COG	COG0863	DNA modification methylase	NA
UHGV-0120538_43	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0120538_44	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0120538_44	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0120538_44	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0120538_46	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0120538_47	PHROG	phrog_22543	NA	unknown function
UHGV-0120538_47	UniRef90	UniRef90_UPI001F2DACFB	zinc ribbon domain-containing protein	NA
UHGV-0120538_49	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0120538_50	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0120538_50	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0120538_51	PHROG	phrog_27610	NA	unknown function
UHGV-0120538_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120538_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120538_52	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0120538_53	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0120538_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120538_53	UniRef90	UniRef90_UPI0015D721B0	helix-turn-helix domain-containing protein	NA
UHGV-0120538_53	eggNOG-mapper	1414719.CBYN010000013_gene1538	Helix-turn-helix XRE-family like proteins	NA
UHGV-0120538_53	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0120538_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120538_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120538_53	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA