UHGV-0120555

Genome information

Genome length 38,529 bps

CDS count 66

Completeness 72.41% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120555
vOTU ID	vOTU-031804
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_299188
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	72.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.11
Jumbo phage	No

Genome content
Genome length	38,529 bps
GC content	40.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.12%
Average CDS length	530.73 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120555_2	eggNOG-mapper	1064535.MELS_1123	NA	NA
UHGV-0120555_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0120555_3	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0120555_3	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0120555_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120555_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120555_3	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0120555_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0120555_5	PHROG	phrog_435	endolysin	lysis
UHGV-0120555_5	UniRef90	UniRef90_A0A4R3JAD4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0120555_5	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0120555_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0120555_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0120555_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0120555_6	PHROG	phrog_918	NA	unknown function
UHGV-0120555_6	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-0120555_6	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0120555_6	Pfam	PF19791	NA	DUF6275
UHGV-0120555_6	Structural annotation	PF19791	NA	NA
UHGV-0120555_7	PHROG	phrog_199	holin	lysis
UHGV-0120555_7	UniRef90	UniRef90_S2YKE1	Toxin secretion/phage lysis holin	NA
UHGV-0120555_7	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0120555_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0120555_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0120555_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0120555_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0120555_11	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0120555_11	PHROG	phrog_819	tail protein	tail
UHGV-0120555_11	UniRef90	UniRef90_A0A414UZN8	Collagen-like protein	NA
UHGV-0120555_11	eggNOG-mapper	428127.EUBDOL_01210	self proteolysis	NA
UHGV-0120555_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0120555_11	COG	COG3209	NA	NA
UHGV-0120555_14	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0120555_14	Structural annotation	PF09136	NA	NA
UHGV-0120555_15	PHROG	phrog_16164	NA	unknown function
UHGV-0120555_15	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0120555_15	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0120555_16	UniRef90	UniRef90_UPI000D7A7A43	collagen-like protein	NA
UHGV-0120555_16	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0120555_16	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0120555_17	PHROG	phrog_14030	NA	unknown function
UHGV-0120555_17	UniRef90	UniRef90_A0A4R3JAE4	Phage_lysozyme2 domain-containing protein	NA
UHGV-0120555_17	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0120555_17	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0120555_17	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0120555_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0120555_17	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0120555_18	PHROG	phrog_13289	tail protein	tail
UHGV-0120555_18	UniRef90	UniRef90_A0A4R3J966	Phage minor structural protein	NA
UHGV-0120555_18	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0120555_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0120555_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0120555_18	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0120555_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0120555_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120555_19	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0120555_19	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0120555_19	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0120555_19	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0120555_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0120555_19	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0120555_20	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0120555_20	UniRef90	UniRef90_A0A4R3J7W5	TP901 family phage tail tape measure protein	NA
UHGV-0120555_20	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0120555_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0120555_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0120555_20	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0120555_20	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0120555_21	PHROG	phrog_709	NA	unknown function
UHGV-0120555_21	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0120555_21	Structural annotation	PF11836	NA	NA
UHGV-0120555_22	PHROG	phrog_88	major tail protein	tail
UHGV-0120555_22	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0120555_22	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0120555_22	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0120555_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0120555_23	PHROG	phrog_78	tail terminator	connector
UHGV-0120555_23	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0120555_23	Structural annotation	PF20765	NA	NA
UHGV-0120555_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0120555_24	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0120555_24	eggNOG-mapper	1111121.HMPREF1247_1235	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0120555_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0120555_24	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0120555_25	PHROG	phrog_19734	NA	unknown function
UHGV-0120555_25	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0120555_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0120555_26	PHROG	phrog_749	NA	unknown function
UHGV-0120555_26	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0120555_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0120555_27	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0120555_27	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0120555_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0120555_27	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0120555_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0120555_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120555_27	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120555_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0120555_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0120555_28	UniRef90	UniRef90_A0A4R3J973	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0120555_28	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0120555_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0120555_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0120555_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0120555_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0120555_29	UniRef90	UniRef90_A0A4V2UQ51	HK97 family phage portal protein	NA
UHGV-0120555_29	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0120555_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0120555_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0120555_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0120555_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0120555_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0120555_30	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0120555_30	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0120555_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0120555_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0120555_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0120555_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0120555_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0120555_31	UniRef90	UniRef90_A0A2N5Q1Z2	RNA polymerase subunit sigma-70	NA
UHGV-0120555_31	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0120555_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0120555_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0120555_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0120555_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120555_32	UniRef90	UniRef90_A0A4R3JPH6	HNH endonuclease	NA
UHGV-0120555_32	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0120555_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120555_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120555_33	UniRef90	UniRef90_A0A2N5Q1T5	Chemotaxis protein	NA
UHGV-0120555_33	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0120555_33	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0120555_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120555_35	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0120555_35	eggNOG-mapper	610130.Closa_1384	NA	NA
UHGV-0120555_35	Structural annotation	MF_00307	NA	NA
UHGV-0120555_36	PHROG	phrog_6568	NA	unknown function
UHGV-0120555_38	PHROG	phrog_15198	NA	unknown function
UHGV-0120555_38	UniRef90	UniRef90_S2YRM1	NA	NA
UHGV-0120555_38	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0120555_38	Pfam	PF04448	NA	DUF551
UHGV-0120555_40	PHROG	phrog_8684	NA	unknown function
UHGV-0120555_40	UniRef90	UniRef90_S2Z040	YopX domain-containing protein	NA
UHGV-0120555_40	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0120555_40	Pfam	PF09643	YopX protein	YopX
UHGV-0120555_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0120555_42	PHROG	phrog_10714	NA	unknown function
UHGV-0120555_42	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0120555_43	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120555_43	UniRef90	UniRef90_A0A374AE24	NA	NA
UHGV-0120555_43	eggNOG-mapper	1235802.C823_04659	NA	NA
UHGV-0120555_44	eggNOG-mapper	1235792.C808_05356	NA	NA
UHGV-0120555_50	PHROG	phrog_15077	NA	unknown function
UHGV-0120555_50	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0120555_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0120555_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0120555_51	UniRef90	UniRef90_A0A4R3JSC6	Chromosome partitioning protein	NA
UHGV-0120555_51	eggNOG-mapper	411902.CLOBOL_03890	AAA domain	NA
UHGV-0120555_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-0120555_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0120555_51	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0120555_52	PHROG	phrog_17690	NA	unknown function
UHGV-0120555_52	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0120555_54	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0120555_54	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0120555_54	UniRef90	UniRef90_A0A4R3JPH8	RNase H superfamily protein	NA
UHGV-0120555_54	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0120555_54	Pfam	PF00075	RNase H	RNase_H
UHGV-0120555_54	COG	COG0328	Ribonuclease HI	NA
UHGV-0120555_54	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0120555_55	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120555_55	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0120555_55	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0120555_55	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0120555_56	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0120555_56	PHROG	phrog_24603	NA	unknown function
UHGV-0120555_56	UniRef90	UniRef90_A0A4V2UQ37	Sporulation initiation factor Spo0A-like protein	NA
UHGV-0120555_56	eggNOG-mapper	411470.RUMGNA_01611	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0120555_56	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0120555_56	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0120555_62	UniRef90	UniRef90_UPI001D096ABA	helix-turn-helix transcriptional regulator	NA
UHGV-0120555_62	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0120555_62	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0120555_63	UniRef90	UniRef90_A0A2V1JR76	HTH cro/C1-type domain-containing protein	NA
UHGV-0120555_63	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-0120555_63	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0120555_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120555_63	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0120555_64	PHROG	phrog_87	metallo-protease	other
UHGV-0120555_64	UniRef90	UniRef90_A0A1M6TSV0	Peptidase_M78 domain-containing protein	NA
UHGV-0120555_64	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0120555_64	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0120555_64	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0120555_65	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0120555_65	UniRef90	UniRef90_A0A1E3AYC4	Abi-like protein	NA
UHGV-0120555_65	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-0120555_65	PADLOC	AbiD	AbiD	Abi
UHGV-0120555_65	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0120555_65	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0120555_65	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0120555_66	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0120555_66	PHROG	phrog_95	integrase	integration and excision
UHGV-0120555_66	UniRef90	UniRef90_A0A4R3JPK4	DNA invertase Pin-like site-specific DNA recombinase	NA
UHGV-0120555_66	eggNOG-mapper	97139.C824_00068	Recombinase	NA
UHGV-0120555_66	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0120555_66	Pfam	PF07508	Recombinase	Recombinase
UHGV-0120555_66	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0120555_66	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0120555_66	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA