UHGV-0120695

Genome information

Genome length 35,549 bps

CDS count 58

Completeness 97.22% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120695
vOTU ID	vOTU-072736
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_279975
BioSample	SAMEA3888900
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.46
Jumbo phage	No

Genome content
Genome length	35,549 bps
GC content	46.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.50%
Average CDS length	583.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120695_1	PHROG	phrog_21765	NA	unknown function
UHGV-0120695_1	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0120695_2	PHROG	phrog_9886	NA	unknown function
UHGV-0120695_2	UniRef90	UniRef90_A0A358PQV6	Prophage_tail domain-containing protein	NA
UHGV-0120695_2	eggNOG-mapper	1235792.C808_03048	Prophage endopeptidase tail	NA
UHGV-0120695_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0120695_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0120695_2	COG	COG4926	Phage-related protein	NA
UHGV-0120695_2	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0120695_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120695_3	UniRef90	UniRef90_A0A174GX45	Phage-related protein	NA
UHGV-0120695_3	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-0120695_3	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0120695_4	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0120695_4	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0120695_4	COG	COG1511	NA	NA
UHGV-0120695_4	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0120695_5	PHROG	phrog_706	NA	unknown function
UHGV-0120695_5	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0120695_5	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0120695_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0120695_5	Structural annotation	PF06854	NA	NA
UHGV-0120695_6	Structural annotation	PF16462	NA	NA
UHGV-0120695_7	PHROG	phrog_3099	NA	unknown function
UHGV-0120695_7	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0120695_8	PHROG	phrog_3266	tail completion	connector
UHGV-0120695_8	Structural annotation	PF12691	NA	NA
UHGV-0120695_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0120695_9	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0120695_9	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0120695_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0120695_9	Structural annotation	PF11114	NA	NA
UHGV-0120695_10	PHROG	phrog_3366	NA	unknown function
UHGV-0120695_10	Pfam	PF20536	NA	DUF6751
UHGV-0120695_10	Structural annotation	PF20536	NA	NA
UHGV-0120695_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0120695_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0120695_13	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0120695_13	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0120695_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0120695_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0120695_14	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0120695_14	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0120695_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0120695_14	Structural annotation	PF06810	NA	NA
UHGV-0120695_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0120695_16	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0120695_16	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0120695_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0120695_16	COG	COG2369	NA	NA
UHGV-0120695_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0120695_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0120695_17	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0120695_17	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0120695_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120695_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0120695_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120695_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0120695_18	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0120695_18	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0120695_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0120695_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120695_18	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0120695_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0120695_19	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0120695_19	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0120695_19	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0120695_19	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0120695_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0120695_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0120695_19	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0120695_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0120695_22	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0120695_22	UniRef90	UniRef90_A0A7X5CHR5	Methyltransferase	NA
UHGV-0120695_22	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0120695_22	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0120695_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0120695_22	COG	COG0863	DNA modification methylase	NA
UHGV-0120695_22	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0120695_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0120695_23	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0120695_23	UniRef90	UniRef90_A0A3R6F6T5	Methyltransferase	NA
UHGV-0120695_23	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0120695_23	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0120695_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0120695_23	COG	COG0863	DNA modification methylase	NA
UHGV-0120695_23	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0120695_26	PHROG	phrog_2776	NA	unknown function
UHGV-0120695_26	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0120695_26	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0120695_27	PHROG	phrog_874	NA	unknown function
UHGV-0120695_27	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0120695_27	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0120695_27	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0120695_28	PHROG	phrog_20593	NA	unknown function
UHGV-0120695_30	PHROG	phrog_10714	NA	unknown function
UHGV-0120695_30	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0120695_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0120695_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0120695_36	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0120695_36	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0120695_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0120695_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0120695_36	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0120695_37	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120695_37	eggNOG-mapper	1329516.JPST01000018_gene2628	DnaD domain protein	NA
UHGV-0120695_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120695_37	Structural annotation	PF04492, MF_01584, TIGR01610, TIGR02220, COG5625	NA	NA
UHGV-0120695_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0120695_38	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0120695_38	UniRef90	UniRef90_A0A173S8N6	Holliday junction resolvase	NA
UHGV-0120695_38	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0120695_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0120695_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0120695_39	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0120695_39	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0120695_39	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0120695_39	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0120695_39	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0120695_39	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0120695_39	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0120695_40	PHROG	phrog_7566	NA	unknown function
UHGV-0120695_40	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0120695_40	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0120695_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0120695_41	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0120695_41	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0120695_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0120695_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120695_42	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0120695_42	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0120695_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0120695_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120695_42	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-0120695_43	PHROG	phrog_4400	NA	unknown function
UHGV-0120695_43	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0120695_43	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0120695_43	Structural annotation	PF01743, MF_00957, TIGR01942, COG0617	NA	NA
UHGV-0120695_44	PHROG	phrog_674	NA	unknown function
UHGV-0120695_44	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0120695_44	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-0120695_44	Pfam	PF07083	NA	DUF1351
UHGV-0120695_44	Structural annotation	PF07083	NA	NA
UHGV-0120695_49	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0120695_49	Structural annotation	COG3296	NA	NA
UHGV-0120695_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120695_50	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0120695_51	PHROG	phrog_4621	NA	unknown function
UHGV-0120695_51	eggNOG-mapper	1415774.U728_1126	NA	NA
UHGV-0120695_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120695_53	UniRef90	UniRef90_UPI001C015CA8	helix-turn-helix domain-containing protein	NA
UHGV-0120695_53	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0120695_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120695_53	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0120695_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0120695_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120695_54	UniRef90	UniRef90_UPI001C00E09B	helix-turn-helix transcriptional regulator	NA
UHGV-0120695_54	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-0120695_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120695_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120695_54	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0120695_55	PHROG	phrog_20886	NA	unknown function
UHGV-0120695_55	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0120695_55	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0120695_55	Structural annotation	PF06114	NA	NA
UHGV-0120695_57	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0120695_58	KOfam	K14059	int; integrase	NA
UHGV-0120695_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0120695_58	UniRef90	UniRef90_UPI0004952FB5	site-specific integrase	NA
UHGV-0120695_58	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-0120695_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120695_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120695_58	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA