UHGV-0120750

Genome information

Genome length 42,372 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120750
vOTU ID	vOTU-079039
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_294591
BioSample	SAMEA4431951
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.18
Jumbo phage	No

Genome content
Genome length	42,372 bps
GC content	53.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	88.92%
Average CDS length	612.77 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120750_1	UniRef90	UniRef90_X1SS04	GATase domain-containing protein (Fragment)	NA
UHGV-0120750_1	eggNOG-mapper	657322.FPR_28980	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates	NA
UHGV-0120750_1	COG	COG0504	CTP synthase (UTP-ammonia lyase)	NA
UHGV-0120750_2	KOfam	K21021	tpbB; diguanylate cyclase [EC:2.7.7.65]	NA
UHGV-0120750_2	PHROG	phrog_5594	NA	unknown function
UHGV-0120750_2	UniRef90	UniRef90_A0A173R6W7	Probable diguanylate cyclase YdaM	NA
UHGV-0120750_2	eggNOG-mapper	657322.FPR_28970	diguanylate cyclase	NA
UHGV-0120750_2	Pfam	PF00990	Diguanylate cyclase, GGDEF domain	GGDEF
UHGV-0120750_2	NCBIFam	TIGR00254.1	diguanylate cyclase	NA
UHGV-0120750_2	COG	COG2199	GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants	NA
UHGV-0120750_3	KOfam	K14059	int; integrase	NA
UHGV-0120750_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0120750_3	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0120750_3	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0120750_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120750_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120750_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0120750_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120750_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0120750_4	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0120750_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120750_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120750_4	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0120750_8	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0120750_8	Structural annotation	COG5342	NA	NA
UHGV-0120750_10	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0120750_10	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0120750_10	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0120750_11	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0120750_18	PHROG	phrog_14970	NA	unknown function
UHGV-0120750_18	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0120750_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0120750_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0120750_19	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0120750_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0120750_21	PHROG	phrog_7566	NA	unknown function
UHGV-0120750_21	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0120750_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0120750_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120750_22	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0120750_22	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0120750_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0120750_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0120750_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120750_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0120750_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0120750_23	PHROG	phrog_6969	NA	unknown function
UHGV-0120750_23	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0120750_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0120750_23	Pfam	PF19481	NA	DUF6017
UHGV-0120750_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120750_23	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0120750_24	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0120750_24	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0120750_24	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0120750_24	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0120750_24	Pfam	PF13614	AAA domain	AAA_31
UHGV-0120750_24	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0120750_24	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0120750_25	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0120750_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0120750_26	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0120750_26	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-0120750_26	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0120750_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0120750_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0120750_26	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0120750_27	Structural annotation	PF04545	NA	NA
UHGV-0120750_32	PHROG	phrog_8680	NA	unknown function
UHGV-0120750_32	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0120750_32	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0120750_32	Pfam	PF14386	NA	DUF4417
UHGV-0120750_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0120750_32	Structural annotation	PF14386	NA	NA
UHGV-0120750_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120750_33	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0120750_33	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0120750_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0120750_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0120750_34	PHROG	phrog_13845	NA	unknown function
UHGV-0120750_34	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0120750_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0120750_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0120750_35	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0120750_35	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0120750_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0120750_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0120750_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0120750_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0120750_36	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0120750_36	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0120750_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0120750_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0120750_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0120750_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0120750_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0120750_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0120750_37	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0120750_37	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0120750_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0120750_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0120750_37	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0120750_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0120750_38	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0120750_38	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0120750_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0120750_38	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0120750_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0120750_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120750_38	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120750_39	PHROG	phrog_749	NA	unknown function
UHGV-0120750_39	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0120750_40	PHROG	phrog_19734	NA	unknown function
UHGV-0120750_40	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0120750_40	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0120750_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0120750_41	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0120750_41	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0120750_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0120750_42	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0120750_42	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0120750_42	Structural annotation	TIGR01725	NA	NA
UHGV-0120750_43	PHROG	phrog_88	major tail protein	tail
UHGV-0120750_43	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0120750_43	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0120750_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0120750_43	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0120750_46	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0120750_46	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0120750_46	eggNOG-mapper	1224164.B843_03450	Tail protein	NA
UHGV-0120750_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0120750_46	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0120750_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0120750_46	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0120750_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120750_47	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0120750_47	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0120750_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0120750_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0120750_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0120750_48	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0120750_48	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0120750_48	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0120750_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0120750_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0120750_48	COG	COG4926	Phage-related protein	NA
UHGV-0120750_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0120750_50	KOfam	K01051	E3.1.1.11; pectinesterase [EC:3.1.1.11]	NA
UHGV-0120750_50	UniRef90	UniRef90_UPI001D0919FE	pectinesterase family protein	NA
UHGV-0120750_50	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0120750_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0120750_51	PHROG	phrog_291	endolysin	lysis
UHGV-0120750_51	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0120750_51	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0120750_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0120750_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0120750_51	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0120750_53	PHROG	phrog_15303	NA	unknown function
UHGV-0120750_55	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0120750_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0120750_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120750_56	UniRef90	UniRef90_A0A386H238	Helix-turn-helix domain-containing protein	NA
UHGV-0120750_56	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0120750_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0120750_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120750_56	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0120750_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120750_56	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0120750_60	PHROG	phrog_16490	NA	unknown function
UHGV-0120750_60	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0120750_61	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0120750_62	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA