UHGV-0120761

Genome information

Genome length 34,929 bps

CDS count 51

Completeness 86.70% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120761
vOTU ID	vOTU-031357
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_278865
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.27
Jumbo phage	No

Genome content
Genome length	34,929 bps
GC content	54.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.30%
Average CDS length	635.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120761_1	eggNOG-mapper	742738.HMPREF9460_03967	NA	NA
UHGV-0120761_2	PHROG	phrog_2310	NA	unknown function
UHGV-0120761_4	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0120761_4	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0120761_5	PHROG	phrog_18725	NA	unknown function
UHGV-0120761_5	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0120761_5	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0120761_6	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0120761_6	PHROG	phrog_11157	NA	unknown function
UHGV-0120761_6	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0120761_6	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0120761_6	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0120761_6	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0120761_6	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0120761_6	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0120761_7	PHROG	phrog_1589	NA	unknown function
UHGV-0120761_7	UniRef90	UniRef90_A2EQK5	Surface antigen BspA-like	NA
UHGV-0120761_7	eggNOG-mapper	5722.XP_001322326.1	protein kinase A regulatory subunit binding	NA
UHGV-0120761_7	Pfam	PF12810	Glycine rich protein	Gly_rich
UHGV-0120761_7	Structural annotation	PF12810, PF16893, TIGR04488, COG3979	NA	NA
UHGV-0120761_8	PHROG	phrog_13879	NA	unknown function
UHGV-0120761_8	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0120761_8	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0120761_9	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0120761_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0120761_10	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0120761_10	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0120761_10	COG	COG5412	Phage-related protein	NA
UHGV-0120761_10	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0120761_12	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0120761_13	PHROG	phrog_885	major tail protein	tail
UHGV-0120761_13	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0120761_13	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0120761_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0120761_14	PHROG	phrog_17405	head protein	head and packaging
UHGV-0120761_14	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0120761_14	Structural annotation	PF11367	NA	NA
UHGV-0120761_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0120761_17	PHROG	phrog_267	major head protein	head and packaging
UHGV-0120761_17	UniRef90	UniRef90_F8UBB7	p22 coat protein	NA
UHGV-0120761_17	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-0120761_17	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0120761_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0120761_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0120761_18	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0120761_18	Structural annotation	PF06810	NA	NA
UHGV-0120761_19	Structural annotation	PF18152	NA	NA
UHGV-0120761_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0120761_20	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0120761_20	eggNOG-mapper	1158602.I590_02569	NA	NA
UHGV-0120761_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0120761_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0120761_21	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-0120761_22	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0120761_22	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0120761_22	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0120761_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0120761_22	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0120761_22	COG	COG2369	NA	NA
UHGV-0120761_22	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0120761_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0120761_23	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0120761_23	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0120761_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120761_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0120761_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120761_24	PHROG	phrog_10250	NA	unknown function
UHGV-0120761_24	UniRef90	UniRef90_A0A8J6MB41	PBSX family phage terminase large subunit	NA
UHGV-0120761_24	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0120761_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0120761_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120761_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120761_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0120761_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0120761_25	UniRef90	UniRef90_A0A8J6MBH6	Transposase	NA
UHGV-0120761_25	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0120761_25	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0120761_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0120761_25	Structural annotation	PF07141	NA	NA
UHGV-0120761_27	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0120761_27	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0120761_27	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0120761_28	Structural annotation	PF19070	NA	NA
UHGV-0120761_32	PHROG	phrog_38832	NA	unknown function
UHGV-0120761_32	UniRef90	UniRef90_UPI00145A074D	NA	NA
UHGV-0120761_32	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0120761_34	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0120761_34	UniRef90	UniRef90_A0A498CN80	Class I SAM-dependent methyltransferase	NA
UHGV-0120761_34	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0120761_34	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0120761_34	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0120761_34	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0120761_34	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0120761_35	Structural annotation	PF04936, NF033558	NA	NA
UHGV-0120761_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0120761_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0120761_36	UniRef90	UniRef90_UPI0018A058D6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0120761_36	eggNOG-mapper	742738.HMPREF9460_01358	Endodeoxyribonuclease RusA	NA
UHGV-0120761_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0120761_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0120761_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0120761_37	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0120761_37	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0120761_37	UniRef90	UniRef90_UPI0018A0FC0D	AAA family ATPase	NA
UHGV-0120761_37	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0120761_37	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0120761_37	Pfam	PF13481	AAA domain	AAA_25
UHGV-0120761_37	COG	COG3598	RecA-family ATPase	NA
UHGV-0120761_37	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0120761_38	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0120761_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0120761_38	UniRef90	UniRef90_UPI00189FE75B	DEAD/DEAH box helicase	NA
UHGV-0120761_38	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-0120761_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0120761_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0120761_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0120761_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0120761_38	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0120761_39	PHROG	phrog_2698	NA	unknown function
UHGV-0120761_39	UniRef90	UniRef90_UPI0018A0CF19	NA	NA
UHGV-0120761_39	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0120761_39	Structural annotation	PF05037	NA	NA
UHGV-0120761_40	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120761_40	UniRef90	UniRef90_UPI0018A1021B	ATP-binding protein	NA
UHGV-0120761_40	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0120761_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-0120761_40	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0120761_41	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0120761_41	PHROG	phrog_1499	NA	unknown function
UHGV-0120761_41	UniRef90	UniRef90_UPI00189C91C8	ATP-binding protein	NA
UHGV-0120761_41	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0120761_41	Pfam	PF13476	AAA domain	AAA_23
UHGV-0120761_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0120761_41	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0120761_42	PHROG	phrog_1029	NA	unknown function
UHGV-0120761_42	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0120761_42	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0120761_43	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0120761_43	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0120761_43	eggNOG-mapper	552398.HMPREF0866_01626	NA	NA
UHGV-0120761_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0120761_45	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0120761_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0120761_45	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0120761_50	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120761_50	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0120761_50	UniRef90	UniRef90_A0A3E2U242	Helix-turn-helix domain-containing protein	NA
UHGV-0120761_50	eggNOG-mapper	1120978.KB894087_gene408	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0120761_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120761_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0120761_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0120761_51	UniRef90	UniRef90_A0A498D1Q4	XRE family transcriptional regulator	NA
UHGV-0120761_51	eggNOG-mapper	35344.A0A097PBE5_BPT12	Peptidase S24-like	NA
UHGV-0120761_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120761_51	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA