UHGV-0120773

Genome information

Genome length 26,467 bps

CDS count 28

Completeness 67.21% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120773
vOTU ID	vOTU-018370
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293512
BioSample	SAMEA4431974
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.81
Jumbo phage	No

Genome content
Genome length	26,467 bps
GC content	29.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	94.00%
Average CDS length	889.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120773_1	PHROG	phrog_9628	NA	unknown function
UHGV-0120773_1	UniRef90	UniRef90_A0A8I0DLJ3	DNA-binding response regulator	NA
UHGV-0120773_1	eggNOG-mapper	1414720.CBYM010000001_gene690	NA	NA
UHGV-0120773_1	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0120773_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0120773_3	PHROG	phrog_216	integrase	integration and excision
UHGV-0120773_3	UniRef90	UniRef90_A0A1C6HZT4	Site-specific tyrosine recombinase XerC	NA
UHGV-0120773_3	eggNOG-mapper	1294142.CINTURNW_1679	Phage integrase family	NA
UHGV-0120773_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120773_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120773_3	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0120773_4	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0120773_4	UniRef90	UniRef90_A0A1C6HZX5	Phage terminase small subunit	NA
UHGV-0120773_4	eggNOG-mapper	1305708.M9Q2K7_9CAUD	NA	NA
UHGV-0120773_4	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0120773_4	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0120773_4	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0120773_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120773_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0120773_5	UniRef90	UniRef90_A0A1B8RSV7	Terminase	NA
UHGV-0120773_5	eggNOG-mapper	1280689.AUJC01000003_gene962	Phage terminase, large subunit, PBSX family	NA
UHGV-0120773_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0120773_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0120773_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120773_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120773_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0120773_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-0120773_6	UniRef90	UniRef90_A0A1C6HYW3	Phage portal protein, SPP1 family	NA
UHGV-0120773_6	eggNOG-mapper	1280689.AUJC01000003_gene963	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0120773_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120773_6	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0120773_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0120773_8	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0120773_8	UniRef90	UniRef90_A0A1C6HZ48	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0120773_8	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0120773_8	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0120773_8	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0120773_8	COG	COG2369	NA	NA
UHGV-0120773_8	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0120773_9	PHROG	phrog_774	NA	unknown function
UHGV-0120773_9	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0120773_10	PHROG	phrog_918	NA	unknown function
UHGV-0120773_10	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0120773_10	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0120773_10	Pfam	PF19791	NA	DUF6275
UHGV-0120773_10	Structural annotation	PF19791	NA	NA
UHGV-0120773_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0120773_11	UniRef90	UniRef90_UPI0011593FAC	NA	NA
UHGV-0120773_11	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0120773_11	Pfam	PF14265	NA	DUF4355
UHGV-0120773_11	Structural annotation	PF14265	NA	NA
UHGV-0120773_12	PHROG	phrog_283	major head protein	head and packaging
UHGV-0120773_12	UniRef90	UniRef90_A0A1I2NUB2	p22 coat protein-gene protein 5	NA
UHGV-0120773_12	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0120773_12	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0120773_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0120773_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0120773_13	UniRef90	UniRef90_UPI0018AC39AE	phage head-tail connector protein	NA
UHGV-0120773_13	eggNOG-mapper	1280689.AUJC01000003_gene968	Phage gp6-like head-tail connector protein	NA
UHGV-0120773_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0120773_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0120773_14	PHROG	phrog_2168	NA	unknown function
UHGV-0120773_14	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0120773_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0120773_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0120773_15	UniRef90	UniRef90_A0A1C6I123	Phage protein, HK97 gp10 family	NA
UHGV-0120773_15	eggNOG-mapper	1211844.CBLM010000016_gene1487	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0120773_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0120773_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0120773_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0120773_16	PHROG	phrog_78	tail terminator	connector
UHGV-0120773_16	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0120773_16	Structural annotation	PF05657	NA	NA
UHGV-0120773_17	PHROG	phrog_158	major tail protein	tail
UHGV-0120773_17	UniRef90	UniRef90_A0A386PK83	Phage tail protein	NA
UHGV-0120773_17	eggNOG-mapper	1280692.AUJL01000025_gene2074	Phage tail tube protein, TTP	NA
UHGV-0120773_17	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0120773_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0120773_18	UniRef90	UniRef90_UPI001E51FC16	NA	NA
UHGV-0120773_18	eggNOG-mapper	1280692.AUJL01000025_gene2072	NA	NA
UHGV-0120773_18	Pfam	PF19591	NA	DUF6096
UHGV-0120773_19	PHROG	phrog_2066	NA	unknown function
UHGV-0120773_19	eggNOG-mapper	1280692.AUJL01000025_gene2071	NA	NA
UHGV-0120773_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0120773_20	UniRef90	UniRef90_UPI000C0860A2	phage tail tape measure protein	NA
UHGV-0120773_20	eggNOG-mapper	1280692.AUJL01000025_gene2070	phage tail tape measure protein	NA
UHGV-0120773_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0120773_20	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0120773_21	PHROG	phrog_1194	NA	unknown function
UHGV-0120773_21	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0120773_21	Pfam	PF20458	NA	DUF6711
UHGV-0120773_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0120773_22	PHROG	phrog_2566	NA	unknown function
UHGV-0120773_22	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0120773_23	PHROG	phrog_1401	NA	unknown function
UHGV-0120773_23	UniRef90	UniRef90_UPI0018A98488	NA	NA
UHGV-0120773_23	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0120773_23	Structural annotation	PF07761	NA	NA
UHGV-0120773_24	PHROG	phrog_16267	NA	unknown function
UHGV-0120773_24	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0120773_24	COG	COG4926	Phage-related protein	NA
UHGV-0120773_25	PHROG	phrog_18444	NA	unknown function
UHGV-0120773_25	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0120773_26	PHROG	phrog_199	holin	lysis
UHGV-0120773_26	UniRef90	UniRef90_UPI001C0E460E	phage holin family protein	NA
UHGV-0120773_26	eggNOG-mapper	1499684.CCNP01000023_gene3170	Bacteriophage holin family	NA
UHGV-0120773_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0120773_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0120773_26	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0120773_27	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0120773_27	UniRef90	UniRef90_UPI0010569FC9	Rha family transcriptional regulator	NA
UHGV-0120773_27	eggNOG-mapper	1567013.A0A0A7RVU3_9CAUD	NA	NA
UHGV-0120773_27	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0120773_27	Structural annotation	PF09669, PF10552, TIGR02681, COG3646	NA	NA
UHGV-0120773_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0120773_28	PHROG	phrog_435	endolysin	lysis
UHGV-0120773_28	UniRef90	UniRef90_UPI0018A8D11E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0120773_28	eggNOG-mapper	545697.HMPREF0216_02873	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0120773_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0120773_28	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA