UHGV-0120774

Genome information

Genome length 36,955 bps

CDS count 62

Completeness 93.62% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120774
vOTU ID	vOTU-063738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293515
BioSample	SAMEA4431974
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.62% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.51
Jumbo phage	No

Genome content
Genome length	36,955 bps
GC content	39.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.88%
Average CDS length	557.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120774_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0120774_1	PHROG	phrog_291	endolysin	lysis
UHGV-0120774_1	UniRef90	UniRef90_S2YFN0	LysM domain-containing protein	NA
UHGV-0120774_1	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0120774_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0120774_1	Pfam	PF01476	LysM domain	LysM
UHGV-0120774_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0120774_1	Structural annotation	PF01183, PF01476, PF08230, TIGR02899, COG3757	NA	NA
UHGV-0120774_2	PHROG	phrog_199	holin	lysis
UHGV-0120774_2	UniRef90	UniRef90_S2YG25	Toxin secretion/phage lysis holin	NA
UHGV-0120774_2	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0120774_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0120774_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0120774_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0120774_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0120774_3	PHROG	phrog_1382	NA	unknown function
UHGV-0120774_3	eggNOG-mapper	445972.ANACOL_00202	NA	NA
UHGV-0120774_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0120774_4	PHROG	phrog_12931	NA	unknown function
UHGV-0120774_4	eggNOG-mapper	742723.HMPREF9477_00891	NA	NA
UHGV-0120774_5	PHROG	phrog_9994	NA	unknown function
UHGV-0120774_5	UniRef90	UniRef90_UPI000C7605CE	H-type lectin domain-containing protein	NA
UHGV-0120774_5	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0120774_5	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0120774_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0120774_6	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0120774_6	eggNOG-mapper	742723.HMPREF9477_00895	NA	NA
UHGV-0120774_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0120774_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0120774_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120774_7	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0120774_7	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0120774_8	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-0120774_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0120774_8	eggNOG-mapper	673839.D2J070_9CAUD	peptidoglycan catabolic process	NA
UHGV-0120774_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0120774_10	PHROG	phrog_1021	NA	unknown function
UHGV-0120774_11	PHROG	phrog_885	major tail protein	tail
UHGV-0120774_11	UniRef90	UniRef90_A8ATP9	Gp11	NA
UHGV-0120774_11	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0120774_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0120774_12	PHROG	phrog_957	head protein	head and packaging
UHGV-0120774_12	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0120774_12	Structural annotation	PF12691	NA	NA
UHGV-0120774_13	UniRef90	UniRef90_UPI001373FCFF	HK97 gp10 family phage protein	NA
UHGV-0120774_13	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-0120774_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0120774_14	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0120774_14	UniRef90	UniRef90_A0A3A6C2W4	Head-tail adaptor protein	NA
UHGV-0120774_14	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0120774_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0120774_15	PHROG	phrog_1236	head protein	head and packaging
UHGV-0120774_15	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0120774_15	Structural annotation	PF05135	NA	NA
UHGV-0120774_17	PHROG	phrog_212	major head protein	head and packaging
UHGV-0120774_17	UniRef90	UniRef90_A0A3A6C2Y6	Phage capsid protein	NA
UHGV-0120774_17	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0120774_17	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0120774_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0120774_18	UniRef90	UniRef90_A0A6N3C3T0	Phage minor structural protein GP20	NA
UHGV-0120774_18	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0120774_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0120774_18	Structural annotation	PF06810	NA	NA
UHGV-0120774_19	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0120774_19	Structural annotation	NF040910	NA	NA
UHGV-0120774_21	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0120774_22	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0120774_22	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0120774_23	eggNOG-mapper	411490.ANACAC_00780	NA	NA
UHGV-0120774_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0120774_24	UniRef90	UniRef90_A0A3A6C2R5	Phage_Mu_F domain-containing protein	NA
UHGV-0120774_24	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0120774_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0120774_24	COG	COG2369	NA	NA
UHGV-0120774_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0120774_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0120774_25	UniRef90	UniRef90_A0A3A6C2X4	Phage portal protein	NA
UHGV-0120774_25	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0120774_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120774_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0120774_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120774_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0120774_27	UniRef90	UniRef90_A0A3A6C4T4	PBSX family phage terminase large subunit	NA
UHGV-0120774_27	eggNOG-mapper	1203606.HMPREF1526_00320	Phage terminase, large subunit, PBSX family	NA
UHGV-0120774_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0120774_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0120774_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120774_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120774_27	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0120774_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0120774_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0120774_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0120774_28	UniRef90	UniRef90_A0A3A6CEH6	Terminase small subunit	NA
UHGV-0120774_28	eggNOG-mapper	1321779.HMPREF1984_01312	terminase small subunit	NA
UHGV-0120774_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0120774_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0120774_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0120774_29	PHROG	phrog_5763	NA	unknown function
UHGV-0120774_29	eggNOG-mapper	1235800.C819_02269	NA	NA
UHGV-0120774_30	PHROG	phrog_1281	NA	unknown function
UHGV-0120774_30	UniRef90	UniRef90_UPI00189B6017	NA	NA
UHGV-0120774_30	eggNOG-mapper	1321815.HMPREF9193_02066	NA	NA
UHGV-0120774_30	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0120774_30	COG	COG3600	NA	NA
UHGV-0120774_30	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0120774_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0120774_31	UniRef90	UniRef90_A0A3A5TMG5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0120774_31	eggNOG-mapper	742723.HMPREF9477_00916	NA	NA
UHGV-0120774_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0120774_31	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0120774_35	PHROG	phrog_15198	NA	unknown function
UHGV-0120774_35	UniRef90	UniRef90_F3AAR6	NA	NA
UHGV-0120774_35	Pfam	PF04448	NA	DUF551
UHGV-0120774_37	PHROG	phrog_8684	NA	unknown function
UHGV-0120774_37	UniRef90	UniRef90_A0A855H8M3	YopX domain-containing protein	NA
UHGV-0120774_37	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0120774_37	Pfam	PF09643	YopX protein	YopX
UHGV-0120774_37	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0120774_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0120774_38	PHROG	phrog_10714	NA	unknown function
UHGV-0120774_38	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0120774_38	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0120774_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0120774_39	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0120774_39	UniRef90	UniRef90_A0A3E2TTJ5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0120774_39	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0120774_39	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0120774_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0120774_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0120774_39	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0120774_42	PHROG	phrog_11769	NA	unknown function
UHGV-0120774_42	UniRef90	UniRef90_A0A3A6CEQ7	Phage_rep_org_N domain-containing protein	NA
UHGV-0120774_42	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0120774_42	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0120774_42	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0120774_42	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0120774_43	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0120774_43	eggNOG-mapper	1304866.K413DRAFT_1199	NA	NA
UHGV-0120774_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0120774_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120774_46	UniRef90	UniRef90_A0A3A6CEI5	Single-stranded DNA-binding protein	NA
UHGV-0120774_46	eggNOG-mapper	357809.Cphy_3773	Single-stranded DNA-binding protein	NA
UHGV-0120774_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0120774_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0120774_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120774_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0120774_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0120774_47	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120774_47	UniRef90	UniRef90_A0A3A6C308	Phage recombination protein Bet	NA
UHGV-0120774_47	eggNOG-mapper	536233.CLO_0507	Phage recombination protein Bet	NA
UHGV-0120774_47	Pfam	PF03837	RecT family	RecT
UHGV-0120774_47	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0120774_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0120774_47	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0120774_49	PHROG	phrog_674	NA	unknown function
UHGV-0120774_49	UniRef90	UniRef90_A0A3A6C2T6	NA	NA
UHGV-0120774_49	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0120774_49	Pfam	PF07083	NA	DUF1351
UHGV-0120774_49	Structural annotation	PF07083	NA	NA
UHGV-0120774_50	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0120774_50	UniRef90	UniRef90_A0A3A6C8C7	Recombinase	NA
UHGV-0120774_50	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0120774_50	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0120774_50	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0120774_50	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0120774_50	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0120774_57	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0120774_57	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0120774_57	UniRef90	UniRef90_A0A1C6HMT8	Phage anti-repressor protein	NA
UHGV-0120774_57	eggNOG-mapper	1408823.AXUS01000009_gene1978	AntA/AntB antirepressor	NA
UHGV-0120774_57	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0120774_57	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0120774_57	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0120774_58	UniRef90	UniRef90_UPI00129D3E5C	XRE family transcriptional regulator	NA
UHGV-0120774_58	eggNOG-mapper	1321782.HMPREF1986_00318	NA	NA
UHGV-0120774_58	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0120774_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0120774_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120774_59	UniRef90	UniRef90_UPI000465BF42	helix-turn-helix domain-containing protein	NA
UHGV-0120774_59	eggNOG-mapper	1163671.JAGI01000002_gene3058	Helix-turn-helix domain protein	NA
UHGV-0120774_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120774_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120774_59	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0120774_60	PHROG	phrog_87	metallo-protease	other
UHGV-0120774_60	UniRef90	UniRef90_UPI001E2890E0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0120774_60	eggNOG-mapper	411470.RUMGNA_03229	NA	NA
UHGV-0120774_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0120774_60	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0120774_60	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0120774_61	PHROG	phrog_1847	NA	unknown function
UHGV-0120774_61	UniRef90	UniRef90_UPI00129E22E8	NA	NA
UHGV-0120774_61	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0120774_61	Pfam	PF13250	NA	DUF4041
UHGV-0120774_61	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0120774_61	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0120774_61	Structural annotation	PF13250, PF19824	NA	NA
UHGV-0120774_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0120774_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0120774_62	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0120774_62	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0120774_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0120774_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0120774_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0120774_62	Structural annotation	PF00239, NF041201, COG1961	NA	NA