UHGV-0120821

Genome information

Genome length 36,965 bps

CDS count 71

Completeness 98.29% (high-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120821
vOTU ID	vOTU-066308
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286980
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.25
Jumbo phage	No

Genome content
Genome length	36,965 bps
GC content	29.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.53%
Average CDS length	473.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120821_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0120821_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120821_2	UniRef90	UniRef90_R5YVI1	HTH-type transcriptional regulator SinR	NA
UHGV-0120821_2	eggNOG-mapper	86416.Clopa_3404	helix-turn-helix	NA
UHGV-0120821_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0120821_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120821_2	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0120821_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120821_2	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0120821_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0120821_4	PHROG	phrog_1493	endolysin	lysis
UHGV-0120821_4	UniRef90	UniRef90_K1TXM5	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-0120821_4	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0120821_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0120821_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0120821_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0120821_4	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0120821_5	eggNOG-mapper	536233.CLO_1580	NA	NA
UHGV-0120821_8	PHROG	phrog_1129	holin	lysis
UHGV-0120821_8	UniRef90	UniRef90_A0A1Q6M1T2	Holin	NA
UHGV-0120821_8	eggNOG-mapper	1391647.AVSV01000036_gene884	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0120821_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0120821_8	Structural annotation	PF06946	NA	NA
UHGV-0120821_9	PHROG	phrog_937	hemolysin	other
UHGV-0120821_9	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-0120821_10	PHROG	phrog_5717	tail protein	tail
UHGV-0120821_10	UniRef90	UniRef90_A0A099I3H7	Pilus assembly protein (Fragment)	NA
UHGV-0120821_10	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0120821_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0120821_10	Structural annotation	COG4675	NA	NA
UHGV-0120821_11	Structural annotation	PF03906	NA	NA
UHGV-0120821_12	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0120821_12	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-0120821_12	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0120821_12	COG	COG4926	Phage-related protein	NA
UHGV-0120821_12	Structural annotation	COG4926	NA	NA
UHGV-0120821_13	PHROG	phrog_6616	tail protein	tail
UHGV-0120821_13	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0120821_13	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0120821_13	COG	COG4926	Phage-related protein	NA
UHGV-0120821_13	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-0120821_14	PHROG	phrog_1194	NA	unknown function
UHGV-0120821_14	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0120821_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0120821_15	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0120821_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0120821_15	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-0120821_16	PHROG	phrog_11491	NA	unknown function
UHGV-0120821_16	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-0120821_16	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-0120821_16	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-0120821_18	Structural annotation	PF12363	NA	NA
UHGV-0120821_19	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0120821_20	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0120821_20	Structural annotation	PF05657	NA	NA
UHGV-0120821_21	eggNOG-mapper	445972.ANACOL_01849	NA	NA
UHGV-0120821_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0120821_24	eggNOG-mapper	445972.ANACOL_01847	NA	NA
UHGV-0120821_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0120821_25	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0120821_25	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0120821_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0120821_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120821_25	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120821_26	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0120821_26	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0120821_26	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0120821_26	Pfam	PF14265	NA	DUF4355
UHGV-0120821_26	Structural annotation	PF14265	NA	NA
UHGV-0120821_28	PHROG	phrog_1454	NA	unknown function
UHGV-0120821_30	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0120821_30	UniRef90	UniRef90_A0A372SR94	Phage head morphogenesis protein	NA
UHGV-0120821_30	eggNOG-mapper	1151292.QEW_3259	Phage Mu protein F like protein	NA
UHGV-0120821_30	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0120821_30	COG	COG2369	NA	NA
UHGV-0120821_31	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0120821_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0120821_32	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0120821_32	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0120821_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120821_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0120821_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120821_33	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0120821_33	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0120821_33	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0120821_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0120821_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120821_33	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0120821_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120821_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0120821_34	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-0120821_34	eggNOG-mapper	526218.Sterm_1426	Phage terminase, large subunit, PBSX family	NA
UHGV-0120821_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0120821_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120821_34	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-0120821_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0120821_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0120821_35	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0120821_35	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0120821_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0120821_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0120821_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0120821_39	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0120821_42	PHROG	phrog_26165	NA	unknown function
UHGV-0120821_43	PHROG	phrog_20637	NA	unknown function
UHGV-0120821_43	UniRef90	UniRef90_A0A3C1EAA2	Catalase	NA
UHGV-0120821_43	eggNOG-mapper	658659.HMPREF0983_03105	NA	NA
UHGV-0120821_43	Pfam	PF18907	NA	DUF5662
UHGV-0120821_43	Structural annotation	PF18907	NA	NA
UHGV-0120821_47	UniRef90	UniRef90_UPI001186932C	long-chain fatty acid--CoA ligase	NA
UHGV-0120821_47	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-0120821_49	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0120821_49	eggNOG-mapper	32057.KB217481_gene8515	NA	NA
UHGV-0120821_49	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0120821_50	Structural annotation	PF15188	NA	NA
UHGV-0120821_51	PHROG	phrog_1123	NA	unknown function
UHGV-0120821_51	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0120821_51	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0120821_51	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0120821_54	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0120821_54	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0120821_54	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0120821_54	eggNOG-mapper	796940.HMPREF9628_01758	Participates in initiation and elongation during chromosome replication	NA
UHGV-0120821_54	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0120821_54	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0120821_54	COG	COG0305	Replicative DNA helicase	NA
UHGV-0120821_54	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0120821_55	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0120821_55	UniRef90	UniRef90_A0A2K9P1I8	DnaD domain protein	NA
UHGV-0120821_55	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-0120821_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0120821_55	Structural annotation	PF04492, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0120821_56	PHROG	phrog_7566	NA	unknown function
UHGV-0120821_56	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0120821_57	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0120821_57	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0120821_57	Pfam	PF05772	NinB protein	NinB
UHGV-0120821_57	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0120821_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0120821_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0120821_58	UniRef90	UniRef90_R6B7C1	Single-stranded DNA-binding protein	NA
UHGV-0120821_58	eggNOG-mapper	398512.JQKC01000002_gene1869	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0120821_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0120821_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0120821_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120821_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0120821_58	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0120821_59	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0120821_59	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0120821_59	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0120821_59	Pfam	PF04404	ERF superfamily	ERF
UHGV-0120821_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0120821_59	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0120821_60	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0120821_60	UniRef90	UniRef90_UPI00051BDF29	siphovirus Gp157 family protein	NA
UHGV-0120821_60	eggNOG-mapper	97138.C820_00779	Siphovirus Gp157	NA
UHGV-0120821_60	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0120821_60	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0120821_62	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0120821_62	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0120821_62	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0120821_62	eggNOG-mapper	1246626.BleG1_2591	SpoVT / AbrB like domain	NA
UHGV-0120821_62	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0120821_62	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0120821_62	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0120821_68	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120821_68	UniRef90	UniRef90_A6TRE6	Transcriptional regulator, XRE family	NA
UHGV-0120821_68	eggNOG-mapper	293826.Amet_2612	Helix-turn-helix XRE-family like proteins	NA
UHGV-0120821_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120821_68	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120821_68	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0120821_69	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0120821_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0120821_69	UniRef90	UniRef90_A0A3D1PLJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-0120821_69	eggNOG-mapper	469609.HMPREF0847_01686	transcriptional	NA
UHGV-0120821_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120821_69	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120821_69	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0120821_70	Structural annotation	PF06114	NA	NA
UHGV-0120821_71	KOfam	K14059	int; integrase	NA
UHGV-0120821_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0120821_71	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-0120821_71	eggNOG-mapper	273068.TTE2127	Phage integrase family	NA
UHGV-0120821_71	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0120821_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120821_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120821_71	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA