UHGV-0120858

Genome information

Genome length 20,398 bps

CDS count 37

Completeness 53.89% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120858
vOTU ID	vOTU-042441
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308696
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.75
Jumbo phage	No

Genome content
Genome length	20,398 bps
GC content	57.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	85.95%
Average CDS length	479.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120858_1	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0120858_1	UniRef90	UniRef90_UPI001D06A2D2	NA	NA
UHGV-0120858_1	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0120858_1	Pfam	PF19789	NA	DUF6273
UHGV-0120858_1	Structural annotation	PF19789	NA	NA
UHGV-0120858_3	PHROG	phrog_1382	NA	unknown function
UHGV-0120858_3	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0120858_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0120858_4	PHROG	phrog_291	endolysin	lysis
UHGV-0120858_4	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0120858_4	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0120858_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0120858_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0120858_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0120858_5	PHROG	phrog_4105	NA	unknown function
UHGV-0120858_5	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0120858_6	PHROG	phrog_263	holin	lysis
UHGV-0120858_6	UniRef90	UniRef90_A0A3E2UFE4	Phage holin	NA
UHGV-0120858_6	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0120858_6	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0120858_6	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0120858_6	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0120858_7	KOfam	K14059	int; integrase	NA
UHGV-0120858_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0120858_7	UniRef90	UniRef90_A0A316SC93	Tyr recombinase domain-containing protein	NA
UHGV-0120858_7	eggNOG-mapper	748224.HMPREF9436_01375	Phage integrase family	NA
UHGV-0120858_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0120858_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0120858_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0120858_8	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0120858_8	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0120858_8	UniRef90	UniRef90_A0A4Q2K2N5	dUTPase domain-containing protein	NA
UHGV-0120858_8	eggNOG-mapper	591001.Acfer_0591	Belongs to the dCTP deaminase family	NA
UHGV-0120858_8	Pfam	PF00692	dUTPase	dUTPase
UHGV-0120858_8	COG	COG0717	dCTP deaminase	NA
UHGV-0120858_8	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0120858_9	PHROG	phrog_6988	NA	unknown function
UHGV-0120858_9	UniRef90	UniRef90_A0A316SNN9	NA	NA
UHGV-0120858_9	eggNOG-mapper	1288298.rosmuc_04180	NA	NA
UHGV-0120858_9	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0120858_9	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-0120858_10	PHROG	phrog_419	NA	unknown function
UHGV-0120858_10	UniRef90	UniRef90_UPI001CBFD05B	PGDYG domain-containing protein	NA
UHGV-0120858_10	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0120858_10	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0120858_10	Structural annotation	PF14083	NA	NA
UHGV-0120858_11	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0120858_11	UniRef90	UniRef90_UPI001CC1A306	restriction endonuclease	NA
UHGV-0120858_11	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0120858_11	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0120858_11	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-0120858_13	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0120858_13	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0120858_13	UniRef90	UniRef90_E2ZI88	DNA-binding helix-turn-helix protein	NA
UHGV-0120858_13	eggNOG-mapper	748224.HMPREF9436_01379	NA	NA
UHGV-0120858_13	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0120858_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120858_13	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0120858_19	PHROG	phrog_3777	NA	unknown function
UHGV-0120858_19	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0120858_19	Pfam	PF12957	NA	DUF3846
UHGV-0120858_19	Structural annotation	PF12957	NA	NA
UHGV-0120858_21	UniRef90	UniRef90_A0A2A6ZGS2	HTH_17 domain-containing protein	NA
UHGV-0120858_21	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0120858_21	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0120858_21	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0120858_21	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0120858_26	Structural annotation	PF10735	NA	NA
UHGV-0120858_27	PHROG	phrog_24484	NA	unknown function
UHGV-0120858_28	UniRef90	UniRef90_A0A2A6ZGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0120858_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0120858_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0120858_33	eggNOG-mapper	525254.HMPREF0072_1311	NA	NA
UHGV-0120858_33	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0120858_34	UniRef90	UniRef90_A0A329UG64	SqdX protein	NA
UHGV-0120858_34	Structural annotation	PF06530, MF_00674, TIGR01637, COG1342	NA	NA
UHGV-0120858_35	UniRef90	UniRef90_UPI001F42B438	transposase	NA
UHGV-0120858_35	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0120858_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120858_36	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0120858_36	UniRef90	UniRef90_A0A316SB77	Terminase-like family protein	NA
UHGV-0120858_36	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0120858_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0120858_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120858_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0120858_37	PHROG	phrog_156	portal protein	head and packaging
UHGV-0120858_37	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0120858_37	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0120858_37	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA