UHGV-0120952

Genome information

Genome length 31,947 bps

CDS count 43

Completeness 87.77% (medium-quality)

geNomad score 0.9577

Prediction confidence Confident

Genome information
Genome ID	UHGV-0120952
vOTU ID	vOTU-024015
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_299594
BioSample	SAMEA103958153
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9577
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.57
Jumbo phage	No

Genome content
Genome length	31,947 bps
GC content	38.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.62%
Average CDS length	682.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0120952_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0120952_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0120952_2	UniRef90	UniRef90_R6UCI6	Putative phage repressor	NA
UHGV-0120952_2	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0120952_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0120952_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0120952_2	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0120952_2	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0120952_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0120952_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0120952_3	UniRef90	UniRef90_A0A1G4WR83	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0120952_3	eggNOG-mapper	657322.FPR_15470	Helix-turn-helix domain	NA
UHGV-0120952_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0120952_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0120952_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0120952_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0120952_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0120952_4	UniRef90	UniRef90_B0P6Y9	BRO family, N-terminal domain protein	NA
UHGV-0120952_4	eggNOG-mapper	445972.ANACOL_00517	BRO family, N-terminal domain	NA
UHGV-0120952_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0120952_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0120952_4	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0120952_11	PHROG	phrog_310	transposase	integration and excision
UHGV-0120952_11	UniRef90	UniRef90_N9YVV8	Integrase catalytic domain-containing protein	NA
UHGV-0120952_11	eggNOG-mapper	411902.CLOBOL_06330	PFAM Transposase-like, Mu	NA
UHGV-0120952_11	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0120952_11	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0120952_11	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0120952_11	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0120952_11	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0120952_12	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0120952_12	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0120952_12	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0120952_12	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0120952_12	Pfam	PF13401	AAA domain	AAA_22
UHGV-0120952_12	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0120952_12	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0120952_14	PHROG	phrog_14853	NA	unknown function
UHGV-0120952_14	eggNOG-mapper	457412.RSAG_01169	NA	NA
UHGV-0120952_15	PHROG	phrog_33075	NA	unknown function
UHGV-0120952_15	UniRef90	UniRef90_A0A416REG9	Addiction module toxin RelE	NA
UHGV-0120952_15	eggNOG-mapper	665950.HMPREF1025_01591	SPTR Toxin-antitoxin system, toxin component, RelE family	NA
UHGV-0120952_16	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0120952_16	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0120952_16	UniRef90	UniRef90_A0A3D0XCG1	AbrB family transcriptional regulator	NA
UHGV-0120952_16	eggNOG-mapper	411902.CLOBOL_06320	toxin-antitoxin pair type II binding	NA
UHGV-0120952_16	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0120952_16	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0120952_16	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0120952_16	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0120952_17	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0120952_17	AcrCatalog	cluster_71843	NA	NA
UHGV-0120952_18	PHROG	phrog_286	NA	unknown function
UHGV-0120952_18	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0120952_18	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0120952_18	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0120952_18	Structural annotation	PF06252	NA	NA
UHGV-0120952_19	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0120952_19	UniRef90	UniRef90_R6U5E4	Mor transcription activator domain protein	NA
UHGV-0120952_19	eggNOG-mapper	663278.Ethha_2379	Mor transcription activator	NA
UHGV-0120952_19	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0120952_19	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0120952_19	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0120952_20	eggNOG-mapper	663278.Ethha_1583	NA	NA
UHGV-0120952_21	PHROG	phrog_25462	NA	unknown function
UHGV-0120952_21	UniRef90	UniRef90_R6VAN7	Putative vgr-related protein	NA
UHGV-0120952_21	eggNOG-mapper	552398.HMPREF0866_03124	NA	NA
UHGV-0120952_21	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0120952_22	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0120952_22	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0120952_22	eggNOG-mapper	742733.HMPREF9469_02884	NA	NA
UHGV-0120952_22	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0120952_22	Structural annotation	PF11985	NA	NA
UHGV-0120952_23	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0120952_23	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0120952_23	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0120952_23	eggNOG-mapper	665956.HMPREF1032_02959	Transcription termination factor nusG	NA
UHGV-0120952_23	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0120952_23	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0120952_23	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0120952_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0120952_25	PHROG	phrog_10250	NA	unknown function
UHGV-0120952_25	UniRef90	UniRef90_R6VAM6	PBSX family phage terminase large subunit	NA
UHGV-0120952_25	eggNOG-mapper	756499.Desde_1076	TIGRFAM Phage terminase, large subunit, PBSX	NA
UHGV-0120952_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0120952_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0120952_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0120952_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0120952_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0120952_26	UniRef90	UniRef90_A0A3R6QGE3	Phage portal protein	NA
UHGV-0120952_26	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0120952_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0120952_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0120952_27	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0120952_27	UniRef90	UniRef90_R6RAU0	Phage minor capsid protein 2	NA
UHGV-0120952_27	eggNOG-mapper	86416.Clopa_3380	Phage minor capsid protein 2	NA
UHGV-0120952_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0120952_27	COG	COG2369	NA	NA
UHGV-0120952_27	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0120952_28	UniRef90	UniRef90_UPI0011C790C6	glutamyl-tRNA amidotransferase	NA
UHGV-0120952_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0120952_30	UniRef90	UniRef90_A0A3R6IUE4	Phage major capsid protein	NA
UHGV-0120952_30	eggNOG-mapper	411462.DORLON_00786	COG NOG20168 non supervised orthologous group	NA
UHGV-0120952_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0120952_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0120952_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0120952_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0120952_31	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0120952_31	eggNOG-mapper	457405.FSDG_01586	NA	NA
UHGV-0120952_31	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0120952_31	Structural annotation	PF20557	NA	NA
UHGV-0120952_32	eggNOG-mapper	632518.Calow_0835	NA	NA
UHGV-0120952_32	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0120952_32	Structural annotation	PF10665, MF_01370, TIGR01563, COG5614	NA	NA
UHGV-0120952_33	eggNOG-mapper	525268.HMPREF0308_2098	NA	NA
UHGV-0120952_34	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0120952_34	Structural annotation	PF12691	NA	NA
UHGV-0120952_35	PHROG	phrog_88	major tail protein	tail
UHGV-0120952_35	UniRef90	UniRef90_R6VAJ3	Phage major tail protein phi13 family	NA
UHGV-0120952_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0120952_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0120952_38	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0120952_38	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-0120952_38	eggNOG-mapper	1211817.CCAT010000079_gene1378	nuclear chromosome segregation	NA
UHGV-0120952_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0120952_38	Structural annotation	COG1340	NA	NA
UHGV-0120952_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0120952_39	UniRef90	UniRef90_UPI0006C7C1BB	phage tail family protein	NA
UHGV-0120952_39	eggNOG-mapper	935836.JAEL01000021_gene1484	Phage tail protein	NA
UHGV-0120952_39	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0120952_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0120952_39	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0120952_40	PHROG	phrog_538	minor tail protein	tail
UHGV-0120952_40	UniRef90	UniRef90_UPI0006C82C74	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0120952_40	eggNOG-mapper	1234664.AMRO01000024_gene1822	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0120952_40	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0120952_40	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0120952_41	PHROG	phrog_1220	head protein	head and packaging
UHGV-0120952_41	eggNOG-mapper	1121087.AUCK01000002_gene2490	NA	NA
UHGV-0120952_41	Structural annotation	PF21567	NA	NA
UHGV-0120952_43	PHROG	phrog_19280	NA	unknown function
UHGV-0120952_43	UniRef90	UniRef90_A0A3R6KJJ3	NA	NA
UHGV-0120952_43	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0120952_43	Pfam	PF10651	BppU N-terminal domain	BppU_N