UHGV-0121082

Genome information

Genome length 37,821 bps

CDS count 80

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121082
vOTU ID	vOTU-007017
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295483
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.94
Jumbo phage	No

Genome content
Genome length	37,821 bps
GC content	27.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	91.84%
Average CDS length	437.63 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121082_1	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121082_1	UniRef90	UniRef90_UPI0017479966	GIY-YIG nuclease family protein	NA
UHGV-0121082_1	eggNOG-mapper	1280692.AUJL01000004_gene859	GIY-YIG type nucleases (URI domain)	NA
UHGV-0121082_1	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0121082_1	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0121082_1	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0121082_1	Structural annotation	PF19835, PF07453, PF20987, TIGR01453	NA	NA
UHGV-0121082_2	eggNOG-mapper	592031.GCWU000322_00080	NA	NA
UHGV-0121082_3	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0121082_3	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0121082_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0121082_4	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0121082_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0121082_4	COG	COG2369	NA	NA
UHGV-0121082_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0121082_5	UniRef90	UniRef90_A0A0F0CJG7	Phage minor capsid protein 2	NA
UHGV-0121082_5	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0121082_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0121082_5	COG	COG2369	NA	NA
UHGV-0121082_5	Structural annotation	PF06152	NA	NA
UHGV-0121082_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0121082_6	UniRef90	UniRef90_A0A7X0LW95	A118 family predicted phage portal protein	NA
UHGV-0121082_6	eggNOG-mapper	997296.PB1_16244	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0121082_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0121082_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121082_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0121082_7	UniRef90	UniRef90_UPI001291DD3A	PBSX family phage terminase large subunit	NA
UHGV-0121082_7	eggNOG-mapper	40522.A8ASJ2_BPA50	Pfam:Terminase_3C	NA
UHGV-0121082_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0121082_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0121082_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0121082_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0121082_8	UniRef90	UniRef90_A0A353JAA0	Terminase_3 domain-containing protein (Fragment)	NA
UHGV-0121082_8	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0121082_8	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0121082_11	PHROG	phrog_1233	NA	unknown function
UHGV-0121082_13	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121082_13	eggNOG-mapper	508419.F8J189_9CAUD	magnesium ion binding	NA
UHGV-0121082_13	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0121082_17	PHROG	phrog_11947	NA	unknown function
UHGV-0121082_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0121082_24	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0121082_24	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0121082_24	Pfam	PF14359	NA	DUF4406
UHGV-0121082_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0121082_27	PHROG	phrog_98	NA	unknown function
UHGV-0121082_27	UniRef90	UniRef90_UPI00164D87B3	YopX family protein	NA
UHGV-0121082_27	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-0121082_27	Pfam	PF09643	YopX protein	YopX
UHGV-0121082_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0121082_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0121082_28	Structural annotation	PF20763	NA	NA
UHGV-0121082_29	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0121082_33	PHROG	phrog_9804	NA	unknown function
UHGV-0121082_33	UniRef90	UniRef90_UPI00058D49CF	replicative helicase loader/inhibitor	NA
UHGV-0121082_33	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0121082_33	AcrCatalog	cluster_137185	NA	NA
UHGV-0121082_33	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0121082_33	Structural annotation	PF11417	NA	NA
UHGV-0121082_34	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0121082_34	UniRef90	UniRef90_A0A8I0ADW4	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0121082_34	eggNOG-mapper	585394.RHOM_14010	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0121082_34	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0121082_34	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0121082_34	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0121082_35	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0121082_36	PHROG	phrog_7566	NA	unknown function
UHGV-0121082_36	UniRef90	UniRef90_A0A3R6TI62	Phosphoenolpyruvate carboxykinase	NA
UHGV-0121082_36	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0121082_41	PHROG	phrog_1389	NA	unknown function
UHGV-0121082_41	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0121082_41	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0121082_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121082_43	UniRef90	UniRef90_UPI0008529AFD	NUMOD4 domain-containing protein	NA
UHGV-0121082_43	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0121082_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0121082_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0121082_43	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0121082_43	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0121082_44	Structural annotation	PF00436, MF_00984, NF004512, COG0629	NA	NA
UHGV-0121082_45	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121082_45	UniRef90	UniRef90_A0A843H1N8	ERF family protein	NA
UHGV-0121082_45	eggNOG-mapper	1246.JMEA01000006_gene26	ERF superfamily	NA
UHGV-0121082_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-0121082_45	Pfam	PF20600	Exodeoxyribonuclease X-like C-terminal	ExoX-like_C
UHGV-0121082_45	Structural annotation	PF04404	NA	NA
UHGV-0121082_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0121082_52	PHROG	phrog_3088	amidase	lysis
UHGV-0121082_52	UniRef90	UniRef90_A0A1Q6JUS1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0121082_52	eggNOG-mapper	1499683.CCFF01000017_gene2555	Ami_2	NA
UHGV-0121082_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0121082_52	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0121082_52	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0121082_54	PHROG	phrog_881	holin	lysis
UHGV-0121082_54	UniRef90	UniRef90_UPI0018A8FD4D	phage holin	NA
UHGV-0121082_54	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0121082_54	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0121082_58	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0121082_61	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0121082_67	PHROG	phrog_17524	tail protein	tail
UHGV-0121082_67	UniRef90	UniRef90_R6HDY9	Staphylococcus haemolyticus JCSC1435 DNA complete genome	NA
UHGV-0121082_67	eggNOG-mapper	903814.ELI_3101	Phage minor structural protein	NA
UHGV-0121082_67	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0121082_67	COG	COG4926	Phage-related protein	NA
UHGV-0121082_68	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0121082_68	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0121082_68	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0121082_69	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0121082_70	PHROG	phrog_1194	NA	unknown function
UHGV-0121082_70	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0121082_71	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0121082_71	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0121082_72	PHROG	phrog_706	NA	unknown function
UHGV-0121082_72	UniRef90	UniRef90_UPI001C0B888C	Gp15 family bacteriophage protein	NA
UHGV-0121082_72	eggNOG-mapper	573061.Clocel_0219	Bacteriophage Gp15 protein	NA
UHGV-0121082_72	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0121082_72	Structural annotation	PF06854	NA	NA
UHGV-0121082_74	PHROG	phrog_3099	NA	unknown function
UHGV-0121082_74	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0121082_74	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0121082_76	PHROG	phrog_3266	tail completion	connector
UHGV-0121082_76	UniRef90	UniRef90_A0A353JB81	Chloramphenicol resistance protein	NA
UHGV-0121082_76	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0121082_76	Structural annotation	PF12691	NA	NA
UHGV-0121082_77	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0121082_77	UniRef90	UniRef90_A0A7X2NEE1	Capsid protein	NA
UHGV-0121082_77	eggNOG-mapper	999411.HMPREF1092_03318	Minor capsid protein	NA
UHGV-0121082_77	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0121082_77	Structural annotation	PF11114	NA	NA
UHGV-0121082_78	PHROG	phrog_3366	NA	unknown function
UHGV-0121082_78	eggNOG-mapper	658655.HMPREF0988_02558	NA	NA
UHGV-0121082_78	Pfam	PF20536	NA	DUF6751
UHGV-0121082_78	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0121082_79	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0121082_80	eggNOG-mapper	411471.SUBVAR_06993	NA	NA