UHGV-0121162

Genome information

Genome length 40,899 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121162
vOTU ID	vOTU-045831
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309374
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.91
Jumbo phage	No

Genome content
Genome length	40,899 bps
GC content	50.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.48%
Average CDS length	592.62 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121162_2	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0121162_3	Structural annotation	PF12510	NA	NA
UHGV-0121162_4	PHROG	phrog_20016	NA	unknown function
UHGV-0121162_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0121162_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0121162_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0121162_5	PHROG	phrog_16490	NA	unknown function
UHGV-0121162_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0121162_6	PHROG	phrog_22984	NA	unknown function
UHGV-0121162_7	PHROG	phrog_21718	NA	unknown function
UHGV-0121162_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0121162_8	PHROG	phrog_3754	NA	unknown function
UHGV-0121162_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0121162_10	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-0121162_10	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-0121162_11	PHROG	phrog_1129	holin	lysis
UHGV-0121162_11	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0121162_11	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0121162_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0121162_11	Structural annotation	PF16079	NA	NA
UHGV-0121162_12	PHROG	phrog_4105	NA	unknown function
UHGV-0121162_12	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0121162_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0121162_13	PHROG	phrog_291	endolysin	lysis
UHGV-0121162_13	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0121162_13	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0121162_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0121162_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0121162_13	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0121162_13	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0121162_15	Structural annotation	PF10651	NA	NA
UHGV-0121162_16	PHROG	phrog_9534	head protein	head and packaging
UHGV-0121162_16	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0121162_16	Structural annotation	PF21567	NA	NA
UHGV-0121162_17	PHROG	phrog_538	minor tail protein	tail
UHGV-0121162_17	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0121162_17	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0121162_17	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0121162_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0121162_18	PHROG	phrog_36410	NA	unknown function
UHGV-0121162_18	UniRef90	UniRef90_A0A160INM5	Phage tail protein	NA
UHGV-0121162_18	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0121162_18	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0121162_19	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0121162_19	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0121162_19	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0121162_19	COG	COG5412	Phage-related protein	NA
UHGV-0121162_19	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0121162_20	PHROG	phrog_20920	NA	unknown function
UHGV-0121162_20	UniRef90	UniRef90_S6B1J4	Small-conductance mechanosensitive channel	NA
UHGV-0121162_20	eggNOG-mapper	1536770.R50345_22870	NA	NA
UHGV-0121162_20	Structural annotation	PF16674	NA	NA
UHGV-0121162_22	PHROG	phrog_18646	NA	unknown function
UHGV-0121162_23	PHROG	phrog_885	major tail protein	tail
UHGV-0121162_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0121162_23	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0121162_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0121162_24	PHROG	phrog_17405	head protein	head and packaging
UHGV-0121162_24	Structural annotation	PF11367	NA	NA
UHGV-0121162_25	PHROG	phrog_17977	NA	unknown function
UHGV-0121162_25	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0121162_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0121162_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0121162_27	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0121162_27	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0121162_27	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0121162_27	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0121162_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0121162_28	Structural annotation	PF06810	NA	NA
UHGV-0121162_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0121162_29	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0121162_29	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0121162_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0121162_30	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0121162_30	eggNOG-mapper	1540257.JQMW01000009_gene3375	NA	NA
UHGV-0121162_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0121162_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0121162_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0121162_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0121162_31	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0121162_31	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0121162_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0121162_31	COG	COG2369	NA	NA
UHGV-0121162_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0121162_33	PHROG	phrog_8680	NA	unknown function
UHGV-0121162_33	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0121162_33	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0121162_33	Pfam	PF14386	NA	DUF4417
UHGV-0121162_33	Structural annotation	PF14386	NA	NA
UHGV-0121162_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0121162_34	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0121162_34	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0121162_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0121162_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0121162_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121162_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0121162_35	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0121162_35	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0121162_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0121162_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0121162_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0121162_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121162_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0121162_36	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0121162_36	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0121162_36	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0121162_36	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0121162_37	PHROG	phrog_11237	NA	unknown function
UHGV-0121162_37	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0121162_37	Structural annotation	NF009167	NA	NA
UHGV-0121162_40	PHROG	phrog_9958	NA	unknown function
UHGV-0121162_40	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0121162_40	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0121162_40	Structural annotation	PF19789	NA	NA
UHGV-0121162_41	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0121162_41	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0121162_41	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0121162_41	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0121162_41	Structural annotation	NF007260	NA	NA
UHGV-0121162_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0121162_47	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121162_47	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0121162_47	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0121162_47	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0121162_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0121162_47	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0121162_48	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0121162_48	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0121162_48	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0121162_48	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0121162_48	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0121162_48	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0121162_48	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0121162_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0121162_48	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0121162_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121162_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121162_49	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0121162_49	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0121162_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121162_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121162_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121162_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121162_49	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0121162_50	PHROG	phrog_9804	NA	unknown function
UHGV-0121162_50	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0121162_51	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0121162_51	Pfam	PF19808	NA	DUF6291
UHGV-0121162_51	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0121162_51	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0121162_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121162_51	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0121162_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0121162_52	UniRef90	UniRef90_UPI0012DD1D82	MBL fold metallo-hydrolase	NA
UHGV-0121162_52	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0121162_52	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0121162_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0121162_52	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0121162_53	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0121162_53	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121162_53	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0121162_53	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0121162_53	Pfam	PF03837	RecT family	RecT
UHGV-0121162_53	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0121162_53	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0121162_53	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0121162_54	PHROG	phrog_674	NA	unknown function
UHGV-0121162_54	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0121162_54	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0121162_54	Pfam	PF07083	NA	DUF1351
UHGV-0121162_54	Structural annotation	PF07083	NA	NA
UHGV-0121162_56	PHROG	phrog_7964	NA	unknown function
UHGV-0121162_56	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0121162_56	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0121162_56	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0121162_56	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0121162_56	Structural annotation	NF040481	NA	NA
UHGV-0121162_58	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0121162_58	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0121162_59	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0121162_59	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-0121162_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0121162_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0121162_59	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0121162_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121162_60	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0121162_60	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0121162_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121162_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0121162_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0121162_61	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0121162_62	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0121162_63	KOfam	K14059	int; integrase	NA
UHGV-0121162_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0121162_63	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0121162_63	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0121162_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121162_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121162_63	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA