UHGV-0121181

Genome information

Genome length 38,845 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121181
vOTU ID	vOTU-013318
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_273773
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.08
Jumbo phage	No

Genome content
Genome length	38,845 bps
GC content	43.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.55%
Average CDS length	607.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121181_1	PHROG	phrog_27197	NA	unknown function
UHGV-0121181_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0121181_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0121181_3	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121181_3	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0121181_3	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0121181_4	PHROG	phrog_7566	NA	unknown function
UHGV-0121181_4	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0121181_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0121181_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0121181_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0121181_5	Structural annotation	PF05772	NA	NA
UHGV-0121181_6	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0121181_6	UniRef90	UniRef90_UPI001379B446	replication initiator protein A	NA
UHGV-0121181_6	eggNOG-mapper	428127.EUBDOL_01245	DnaD domain protein	NA
UHGV-0121181_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121181_6	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0121181_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0121181_7	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0121181_7	UniRef90	UniRef90_A0A6N9QKF1	AAA family ATPase	NA
UHGV-0121181_7	eggNOG-mapper	1120998.AUFC01000013_gene2942	PFAM IstB domain protein ATP-binding protein	NA
UHGV-0121181_7	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0121181_7	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0121181_7	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0121181_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0121181_9	UniRef90	UniRef90_A0A1Y4GXE1	MazG domain-containing protein	NA
UHGV-0121181_9	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0121181_9	Pfam	PF19157	NA	DUF5839
UHGV-0121181_10	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121181_10	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0121181_10	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0121181_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121181_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121181_11	UniRef90	UniRef90_UPI00137A68FE	single-stranded DNA-binding protein	NA
UHGV-0121181_11	eggNOG-mapper	888727.HMPREF9092_0557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0121181_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121181_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121181_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121181_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121181_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0121181_12	PHROG	phrog_28936	NA	unknown function
UHGV-0121181_12	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0121181_12	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0121181_13	PHROG	phrog_5781	NA	unknown function
UHGV-0121181_13	UniRef90	UniRef90_UPI000BE33ABF	NA	NA
UHGV-0121181_13	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0121181_13	Pfam	PF14359	NA	DUF4406
UHGV-0121181_13	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0121181_13	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0121181_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0121181_14	PHROG	phrog_5696	NA	unknown function
UHGV-0121181_14	UniRef90	UniRef90_A0A316QTS6	N6_Mtase domain-containing protein	NA
UHGV-0121181_14	eggNOG-mapper	948106.AWZT01000012_gene1459	N-6 DNA Methylase	NA
UHGV-0121181_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0121181_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0121181_14	Structural annotation	PF05185, TIGR00497	NA	NA
UHGV-0121181_15	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0121181_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0121181_15	UniRef90	UniRef90_A0A8E3SJJ8	Tyrosine-type recombinase/integrase	NA
UHGV-0121181_15	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0121181_15	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0121181_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121181_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0121181_15	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0121181_18	PHROG	phrog_15198	NA	unknown function
UHGV-0121181_18	UniRef90	UniRef90_A0A845QIN5	NA	NA
UHGV-0121181_18	eggNOG-mapper	552398.HMPREF0866_01627	NA	NA
UHGV-0121181_18	Pfam	PF04448	NA	DUF551
UHGV-0121181_18	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0121181_20	PHROG	phrog_11237	NA	unknown function
UHGV-0121181_20	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0121181_21	PHROG	phrog_3291	NA	unknown function
UHGV-0121181_21	eggNOG-mapper	457570.Nther_0820	NA	NA
UHGV-0121181_22	PHROG	phrog_1758	acetyltransferase	other
UHGV-0121181_22	UniRef90	UniRef90_A0A6H3LHL2	N-acetyltransferase	NA
UHGV-0121181_22	eggNOG-mapper	272563.CD630_29260	acetyltransferase	NA
UHGV-0121181_22	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0121181_22	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-0121181_23	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0121181_23	UniRef90	UniRef90_A0A0E2HIV1	Phage terminase small subunit	NA
UHGV-0121181_23	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-0121181_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0121181_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0121181_23	COG	COG5484	NA	NA
UHGV-0121181_23	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0121181_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121181_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0121181_24	UniRef90	UniRef90_A0A174M0S1	Phage terminase, large subunit, PBSX family	NA
UHGV-0121181_24	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0121181_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121181_24	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0121181_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0121181_25	UniRef90	UniRef90_UPI001D0411BC	phage portal protein	NA
UHGV-0121181_25	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0121181_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0121181_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0121181_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0121181_26	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-0121181_26	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0121181_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0121181_26	COG	COG2369	NA	NA
UHGV-0121181_26	Structural annotation	PF06152	NA	NA
UHGV-0121181_29	KOfam	K07584	NA	NA
UHGV-0121181_29	PHROG	phrog_4478	peptidase	other
UHGV-0121181_29	UniRef90	UniRef90_UPI0011DCBFB6	ribosomal-processing cysteine protease Prp	NA
UHGV-0121181_29	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0121181_29	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0121181_29	COG	COG2868	NA	NA
UHGV-0121181_29	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0121181_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0121181_30	UniRef90	UniRef90_UPI001D040840	phage scaffolding protein	NA
UHGV-0121181_30	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0121181_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0121181_30	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0121181_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0121181_31	UniRef90	UniRef90_UPI00189A09FD	phage major capsid protein	NA
UHGV-0121181_31	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0121181_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0121181_31	Pfam	PF08308	PEGA domain	PEGA
UHGV-0121181_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0121181_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0121181_31	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0121181_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0121181_32	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0121181_32	eggNOG-mapper	1391647.AVSV01000003_gene1810	NA	NA
UHGV-0121181_33	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0121181_33	UniRef90	UniRef90_UPI0003FC0B4B	putative minor capsid protein	NA
UHGV-0121181_33	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0121181_33	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0121181_33	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0121181_33	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0121181_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0121181_34	UniRef90	UniRef90_UPI000470876F	minor capsid protein	NA
UHGV-0121181_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0121181_34	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0121181_35	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0121181_35	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0121181_35	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0121181_35	Structural annotation	PF12691	NA	NA
UHGV-0121181_36	PHROG	phrog_820	major tail protein	tail
UHGV-0121181_36	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0121181_36	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-0121181_36	COG	COG5492	NA	NA
UHGV-0121181_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0121181_37	Structural annotation	PF10666	NA	NA
UHGV-0121181_38	PHROG	phrog_706	NA	unknown function
UHGV-0121181_38	UniRef90	UniRef90_UPI0009DF23C8	Gp15 family bacteriophage protein	NA
UHGV-0121181_38	eggNOG-mapper	1229517.AMFD01000018_gene176	Bacteriophage Gp15 protein	NA
UHGV-0121181_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0121181_38	Structural annotation	PF06854	NA	NA
UHGV-0121181_39	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0121181_39	UniRef90	UniRef90_UPI001D07B0FF	phage tail tape measure protein	NA
UHGV-0121181_39	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0121181_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0121181_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0121181_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0121181_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0121181_40	UniRef90	UniRef90_A0A3D3FBY5	MtfA protein	NA
UHGV-0121181_40	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0121181_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0121181_40	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0121181_41	PHROG	phrog_3558	tail protein	tail
UHGV-0121181_41	UniRef90	UniRef90_A0A1I1X358	Prophage endopeptidase tail	NA
UHGV-0121181_41	eggNOG-mapper	764299.STRIC_2436	Prophage endopeptidase tail	NA
UHGV-0121181_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0121181_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0121181_41	COG	COG4926	Phage-related protein	NA
UHGV-0121181_41	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0121181_42	PHROG	phrog_372	tail protein	tail
UHGV-0121181_42	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0121181_42	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0121181_42	Pfam	PF05895	NA	DUF859
UHGV-0121181_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0121181_43	PHROG	phrog_937	hemolysin	other
UHGV-0121181_43	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-0121181_44	PHROG	phrog_443	holin	lysis
UHGV-0121181_44	UniRef90	UniRef90_UPI00137AC056	holin	NA
UHGV-0121181_44	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0121181_44	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0121181_44	Structural annotation	PF16945	NA	NA
UHGV-0121181_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0121181_45	PHROG	phrog_435	endolysin	lysis
UHGV-0121181_45	UniRef90	UniRef90_A0A7Y6U7M2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121181_45	eggNOG-mapper	1121090.KB894702_gene1246	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121181_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0121181_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121181_45	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0121181_46	KOfam	K14059	int; integrase	NA
UHGV-0121181_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0121181_46	UniRef90	UniRef90_UPI00088591B6	site-specific integrase	NA
UHGV-0121181_46	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0121181_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0121181_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121181_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0121181_46	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0121181_48	PHROG	phrog_87	metallo-protease	other
UHGV-0121181_48	UniRef90	UniRef90_UPI00117876D3	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0121181_48	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0121181_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0121181_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0121181_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0121181_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0121181_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121181_49	UniRef90	UniRef90_R9N2D4	HTH cro/C1-type domain-containing protein	NA
UHGV-0121181_49	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-0121181_49	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0121181_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0121181_49	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0121181_50	KOfam	K07485	K07485; transposase	NA
UHGV-0121181_50	PHROG	phrog_5749	transposase	integration and excision
UHGV-0121181_50	UniRef90	UniRef90_UPI00041D4B13	ISL3 family transposase	NA
UHGV-0121181_50	eggNOG-mapper	1120998.AUFC01000026_gene775	Transposase	NA
UHGV-0121181_50	Pfam	PF14690	zinc-finger of transposase IS204/IS1001/IS1096/IS1165	zf-ISL3
UHGV-0121181_50	Pfam	PF01610	Transposase	DDE_Tnp_ISL3
UHGV-0121181_50	NCBIFam	NF033550.5	ISL3 family transposase	NA
UHGV-0121181_50	COG	COG3464	Transposase	NA
UHGV-0121181_50	Structural annotation	PF01610, PF20020, NF033550, COG3464	NA	NA
UHGV-0121181_51	UniRef90	UniRef90_UPI001D096ABA	helix-turn-helix transcriptional regulator	NA
UHGV-0121181_51	eggNOG-mapper	1235798.C817_04758	NA	NA
UHGV-0121181_51	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0121181_53	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0121181_54	PHROG	phrog_9607	NA	unknown function
UHGV-0121181_54	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0121181_54	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0121181_55	Structural annotation	NF040990	NA	NA
UHGV-0121181_58	Structural annotation	PF02295, MF_01804, TIGR00122, COG1654	NA	NA
UHGV-0121181_59	PHROG	phrog_4433	NA	unknown function
UHGV-0121181_59	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0121181_59	COG	COG5164	Transcription elongation factor SPT5	NA