UHGV-0121219

Genome information

Genome length 38,298 bps

CDS count 51

Completeness 90.58% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121219
vOTU ID	vOTU-080394
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_288681
BioSample	SAMEA4378316
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.12
Jumbo phage	No

Genome content
Genome length	38,298 bps
GC content	40.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.53%
Average CDS length	688.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121219_1	UniRef90	UniRef90_UPI0018AB16B9	SGNH/GDSL hydrolase family protein	NA
UHGV-0121219_1	eggNOG-mapper	1122915.AUGY01000026_gene2320	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0121219_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0121219_2	PHROG	phrog_18110	NA	unknown function
UHGV-0121219_2	UniRef90	UniRef90_UPI0018AC4820	phage tail protein	NA
UHGV-0121219_2	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0121219_2	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0121219_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0121219_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0121219_2	COG	COG4926	Phage-related protein	NA
UHGV-0121219_2	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0121219_3	Structural annotation	PF07761	NA	NA
UHGV-0121219_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0121219_4	UniRef90	UniRef90_UPI001654ECC4	phage tail family protein	NA
UHGV-0121219_4	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0121219_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0121219_4	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0121219_5	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0121219_5	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0121219_5	UniRef90	UniRef90_UPI0018AB1AB9	phage tail tape measure protein	NA
UHGV-0121219_5	eggNOG-mapper	1235794.C811_01380	Phage-related minor tail protein	NA
UHGV-0121219_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0121219_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0121219_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0121219_7	Structural annotation	PF11836	NA	NA
UHGV-0121219_8	PHROG	phrog_88	major tail protein	tail
UHGV-0121219_8	UniRef90	UniRef90_A0A1C6IVD8	Phage major tail protein, phi13 family	NA
UHGV-0121219_8	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0121219_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0121219_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0121219_9	PHROG	phrog_78	tail terminator	connector
UHGV-0121219_9	UniRef90	UniRef90_A0A3D4X921	Phage tail protein	NA
UHGV-0121219_9	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0121219_9	Structural annotation	PF05657	NA	NA
UHGV-0121219_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0121219_10	UniRef90	UniRef90_A0A1C6IVB7	Phage protein, HK97 gp10 family	NA
UHGV-0121219_10	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0121219_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0121219_11	UniRef90	UniRef90_A5ZPL6	Putative phage head-tail adaptor	NA
UHGV-0121219_11	eggNOG-mapper	1235792.C808_03061	NA	NA
UHGV-0121219_11	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0121219_12	PHROG	phrog_5223	neck protein	connector
UHGV-0121219_12	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0121219_12	Structural annotation	TIGR01560	NA	NA
UHGV-0121219_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0121219_13	UniRef90	UniRef90_A0A1C6IV65	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0121219_13	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0121219_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0121219_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0121219_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0121219_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0121219_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0121219_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0121219_14	UniRef90	UniRef90_A0A1C6IV57	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0121219_14	eggNOG-mapper	536232.CLM_1658	Belongs to the peptidase S14 family	NA
UHGV-0121219_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0121219_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0121219_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0121219_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0121219_15	UniRef90	UniRef90_A0A1C6IVH0	Phage portal protein, HK97 family	NA
UHGV-0121219_15	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0121219_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0121219_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0121219_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0121219_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0121219_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0121219_16	UniRef90	UniRef90_A0A1C6IVJ8	Phage terminase-like protein, large subunit	NA
UHGV-0121219_16	eggNOG-mapper	411459.RUMOBE_00938	NA	NA
UHGV-0121219_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0121219_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0121219_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0121219_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0121219_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0121219_17	UniRef90	UniRef90_A0A1C6IV70	Phage terminase, small subunit	NA
UHGV-0121219_17	eggNOG-mapper	411459.RUMOBE_00939	Phage terminase, small subunit	NA
UHGV-0121219_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0121219_17	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0121219_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0121219_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0121219_18	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121219_18	UniRef90	UniRef90_A0A1C6IUY5	HNH domain-containing protein	NA
UHGV-0121219_18	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0121219_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0121219_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0121219_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121219_19	UniRef90	UniRef90_A0A1C6IW44	RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1	NA
UHGV-0121219_19	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0121219_19	Pfam	PF07374	NA	DUF1492
UHGV-0121219_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0121219_19	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0121219_20	PHROG	phrog_7566	NA	unknown function
UHGV-0121219_20	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0121219_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121219_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121219_21	UniRef90	UniRef90_A0A1C6IVA5	Single-stranded DNA-binding protein	NA
UHGV-0121219_21	eggNOG-mapper	411459.RUMOBE_00993	NA	NA
UHGV-0121219_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121219_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121219_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121219_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121219_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0121219_23	PHROG	phrog_8684	NA	unknown function
UHGV-0121219_23	UniRef90	UniRef90_UPI0018A943A3	YopX family protein	NA
UHGV-0121219_23	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0121219_23	Pfam	PF09643	YopX protein	YopX
UHGV-0121219_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0121219_24	PHROG	phrog_19515	NA	unknown function
UHGV-0121219_24	eggNOG-mapper	457412.RSAG_01163	NA	NA
UHGV-0121219_25	UniRef90	UniRef90_UPI001898116D	NA	NA
UHGV-0121219_25	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0121219_25	Pfam	PF04448	NA	DUF551
UHGV-0121219_25	Structural annotation	PF04448	NA	NA
UHGV-0121219_26	UniRef90	UniRef90_UPI001C00FD03	NA	NA
UHGV-0121219_28	PHROG	phrog_26445	NA	unknown function
UHGV-0121219_28	UniRef90	UniRef90_UPI0018AC840B	helix-turn-helix domain containing protein	NA
UHGV-0121219_28	eggNOG-mapper	97139.C824_00034	NA	NA
UHGV-0121219_28	Structural annotation	PF00196, TIGR04381, COG2771	NA	NA
UHGV-0121219_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0121219_32	PHROG	phrog_15077	NA	unknown function
UHGV-0121219_32	UniRef90	UniRef90_UPI0018AA1051	ParB/RepB/Spo0J family partition protein	NA
UHGV-0121219_32	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0121219_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0121219_32	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0121219_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0121219_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0121219_33	UniRef90	UniRef90_UPI001C00DAF9	ParA family protein	NA
UHGV-0121219_33	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0121219_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-0121219_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0121219_33	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0121219_35	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-0121219_35	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0121219_35	Pfam	PF00075	RNase H	RNase_H
UHGV-0121219_35	COG	COG0328	Ribonuclease HI	NA
UHGV-0121219_35	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0121219_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0121219_36	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0121219_36	Structural annotation	PF01446	NA	NA
UHGV-0121219_37	PHROG	phrog_6058	NA	unknown function
UHGV-0121219_37	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0121219_37	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0121219_39	PHROG	phrog_750	NA	unknown function
UHGV-0121219_39	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0121219_39	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0121219_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0121219_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121219_40	UniRef90	UniRef90_UPI001EDAB686	helix-turn-helix domain-containing protein	NA
UHGV-0121219_40	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121219_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121219_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0121219_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121219_45	UniRef90	UniRef90_UPI0018A9CBC8	helix-turn-helix domain-containing protein	NA
UHGV-0121219_45	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121219_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121219_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0121219_45	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0121219_47	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0121219_47	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0121219_47	UniRef90	UniRef90_UPI0018A88A5E	exonuclease	NA
UHGV-0121219_47	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0121219_47	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0121219_47	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0121219_47	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0121219_47	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0121219_47	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0121219_47	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0121219_49	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-0121219_49	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0121219_50	KOfam	K14059	int; integrase	NA
UHGV-0121219_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0121219_50	UniRef90	UniRef90_A0A1C6H8L7	Site-specific tyrosine recombinase XerD	NA
UHGV-0121219_50	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0121219_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121219_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121219_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0121219_51	eggNOG-mapper	1256908.HMPREF0373_01611	Cytoplasmic, score 8.87	NA
UHGV-0121219_51	Pfam	PF14057	GGGtGRT protein	GGGtGRT