UHGV-0121239

Genome information

Genome length 27,735 bps

CDS count 37

Completeness 67.65% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121239
vOTU ID	vOTU-016608
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284796
BioSample	SAMEA4378315
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.91
Jumbo phage	No

Genome content
Genome length	27,735 bps
GC content	47.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	91.36%
Average CDS length	688.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121239_1	AcrCatalog	cluster_47354	NA	NA
UHGV-0121239_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121239_2	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0121239_2	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0121239_2	Structural annotation	PF04545	NA	NA
UHGV-0121239_3	PHROG	phrog_1762	NA	unknown function
UHGV-0121239_3	UniRef90	UniRef90_UPI001AA13B88	NA	NA
UHGV-0121239_3	eggNOG-mapper	397287.C807_01695	NA	NA
UHGV-0121239_3	Pfam	PF11185	NA	DUF2971
UHGV-0121239_3	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0121239_4	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0121239_4	UniRef90	UniRef90_UPI001AA1016E	helix-turn-helix domain-containing protein	NA
UHGV-0121239_4	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0121239_4	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0121239_4	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0121239_4	Structural annotation	PF07141	NA	NA
UHGV-0121239_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121239_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0121239_5	UniRef90	UniRef90_UPI00192D4B43	terminase	NA
UHGV-0121239_5	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0121239_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121239_5	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0121239_6	PHROG	phrog_31760	NA	unknown function
UHGV-0121239_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0121239_7	UniRef90	UniRef90_E7GRF6	Phage minor capsid protein	NA
UHGV-0121239_7	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0121239_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0121239_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0121239_8	UniRef90	UniRef90_UPI00157055D2	minor capsid protein	NA
UHGV-0121239_8	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0121239_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0121239_8	COG	COG2369	NA	NA
UHGV-0121239_10	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0121239_10	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0121239_11	PHROG	phrog_212	major head protein	head and packaging
UHGV-0121239_11	UniRef90	UniRef90_A0A174WQG5	Phage capsid protein	NA
UHGV-0121239_11	eggNOG-mapper	1408823.AXUS01000024_gene2716	NA	NA
UHGV-0121239_11	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0121239_12	eggNOG-mapper	573061.Clocel_3536	NA	NA
UHGV-0121239_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0121239_13	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0121239_14	PHROG	phrog_8710	NA	unknown function
UHGV-0121239_14	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0121239_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0121239_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0121239_15	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0121239_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0121239_16	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0121239_16	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0121239_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0121239_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0121239_17	PHROG	phrog_820	major tail protein	tail
UHGV-0121239_17	eggNOG-mapper	483218.BACPEC_01149	domain, Protein	NA
UHGV-0121239_17	COG	COG5492	NA	NA
UHGV-0121239_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0121239_18	PHROG	phrog_8300	NA	unknown function
UHGV-0121239_18	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0121239_18	Structural annotation	PF06854	NA	NA
UHGV-0121239_19	PHROG	phrog_8355	NA	unknown function
UHGV-0121239_19	UniRef90	UniRef90_A0A1I0K8W5	Bacteriophage Gp15 protein	NA
UHGV-0121239_19	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0121239_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0121239_19	Structural annotation	PF06854	NA	NA
UHGV-0121239_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0121239_20	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0121239_20	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0121239_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0121239_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0121239_21	PHROG	phrog_1194	NA	unknown function
UHGV-0121239_21	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0121239_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0121239_22	PHROG	phrog_13879	NA	unknown function
UHGV-0121239_22	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0121239_22	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0121239_23	PHROG	phrog_18725	NA	unknown function
UHGV-0121239_23	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0121239_24	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0121239_25	PHROG	phrog_19111	NA	unknown function
UHGV-0121239_25	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-0121239_25	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0121239_25	Structural annotation	PF16351	NA	NA
UHGV-0121239_26	PHROG	phrog_1193	hemolysin	other
UHGV-0121239_26	UniRef90	UniRef90_UPI0017834AC0	hemolysin XhlA family protein	NA
UHGV-0121239_26	eggNOG-mapper	318464.IO99_03750	Haemolysin XhlA	NA
UHGV-0121239_26	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0121239_27	PHROG	phrog_1129	holin	lysis
UHGV-0121239_27	UniRef90	UniRef90_U2D342	Holin family protein	NA
UHGV-0121239_27	eggNOG-mapper	33035.JPJF01000043_gene995	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0121239_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0121239_27	Structural annotation	PF06946	NA	NA
UHGV-0121239_29	PHROG	phrog_19280	NA	unknown function
UHGV-0121239_29	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0121239_29	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0121239_29	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0121239_30	PHROG	phrog_2310	NA	unknown function
UHGV-0121239_30	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0121239_31	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0121239_31	PHROG	phrog_2649	endolysin	lysis
UHGV-0121239_31	UniRef90	UniRef90_A0A174GZ78	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0121239_31	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0121239_31	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0121239_31	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0121239_31	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0121239_32	KOfam	K19118	csd2, cas7; CRISPR-associated protein Csd2	NA
UHGV-0121239_32	UniRef90	UniRef90_E7GTP3	Csd2 family CRISPR-associated protein	NA
UHGV-0121239_32	eggNOG-mapper	742740.HMPREF9474_04288	NA	NA
UHGV-0121239_32	PADLOC	cas_Csd2	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
UHGV-0121239_32	Pfam	PF05107	CRISPR-associated protein Cas7	Cas_Cas7
UHGV-0121239_32	NCBIFam	TIGR02589.1	type I-C CRISPR-associated protein Cas7/Csd2	NA
UHGV-0121239_32	COG	COG3649	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0121239_32	Structural annotation	PF05107, TIGR02589, COG3649	NA	NA
UHGV-0121239_33	PHROG	phrog_25567	NA	unknown function
UHGV-0121239_33	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0121239_33	AcrCatalog	cluster_37554	NA	NA
UHGV-0121239_35	AcrCatalog	cluster_29073	NA	NA
UHGV-0121239_37	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0121239_37	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0121239_37	UniRef90	UniRef90_E7GRI2	HTH cro/C1-type domain-containing protein	NA
UHGV-0121239_37	eggNOG-mapper	742740.HMPREF9474_03527	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121239_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121239_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0121239_37	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA