UHGV-0121285

Genome information

vOTU vOTU-020269

Genome length 43,275 bps

CDS count 46

Completeness 86.97% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121285
vOTU ID	vOTU-020269
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309915
BioSample	SAMEA37124668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.4
Jumbo phage	No

Genome content
Genome length	43,275 bps
GC content	45.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.30%
Average CDS length	879.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121285_1	KOfam	K16566	exoY; exopolysaccharide production protein ExoY	NA
UHGV-0121285_1	UniRef90	UniRef90_A0A401LQT6	Bac_transf domain-containing protein	NA
UHGV-0121285_1	eggNOG-mapper	411476.BACOVA_03791	COG COG2148 Sugar transferases involved in lipopolysaccharide synthesis	NA
UHGV-0121285_1	Pfam	PF02397	Bacterial sugar transferase	Bac_transf
UHGV-0121285_1	COG	COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	NA
UHGV-0121285_2	PHROG	phrog_10608	NA	unknown function
UHGV-0121285_2	eggNOG-mapper	1121101.HMPREF1532_03608	NA	NA
UHGV-0121285_3	UniRef90	UniRef90_R5P1R7	HTH cro/C1-type domain-containing protein	NA
UHGV-0121285_3	eggNOG-mapper	742727.HMPREF9447_01735	Peptidase S24-like	NA
UHGV-0121285_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0121285_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0121285_3	Structural annotation	PF12844, NF010465, COG3655	NA	NA
UHGV-0121285_4	UniRef90	UniRef90_UPI00101D3998	ArsR family transcriptional regulator	NA
UHGV-0121285_4	eggNOG-mapper	1121098.HMPREF1534_03391	NA	NA
UHGV-0121285_5	eggNOG-mapper	1121101.HMPREF1532_03603	NA	NA
UHGV-0121285_6	PHROG	phrog_310	transposase	integration and excision
UHGV-0121285_6	UniRef90	UniRef90_UPI00101DB29B	kinase	NA
UHGV-0121285_6	eggNOG-mapper	1121098.HMPREF1534_03389	Transposase and inactivated derivatives	NA
UHGV-0121285_6	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0121285_6	Structural annotation	PF02914, PF09039, PF09299, NF033594, COG2801	NA	NA
UHGV-0121285_7	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0121285_7	UniRef90	UniRef90_UPI00101B95AB	ATP-binding protein	NA
UHGV-0121285_7	eggNOG-mapper	1121101.HMPREF1532_03601	AAA domain	NA
UHGV-0121285_7	Pfam	PF13401	AAA domain	AAA_22
UHGV-0121285_7	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0121285_7	Structural annotation	PF13401, MF_01509, TIGR03015, TIGR03070, COG2842	NA	NA
UHGV-0121285_8	eggNOG-mapper	1121098.HMPREF1534_03387	NA	NA
UHGV-0121285_9	PHROG	phrog_6891	ATPase	other
UHGV-0121285_9	UniRef90	UniRef90_UPI0018AA3E30	ATP-binding protein	NA
UHGV-0121285_9	eggNOG-mapper	483215.BACFIN_05953	ATP-dependent serine protease	NA
UHGV-0121285_9	COG	COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	NA
UHGV-0121285_9	Structural annotation	PF03796, MF_01498, TIGR00416, COG1066	NA	NA
UHGV-0121285_10	UniRef90	UniRef90_UPI00101C4011	RNA polymerase subunit sigma	NA
UHGV-0121285_10	eggNOG-mapper	1122971.BAME01000043_gene3743	NA	NA
UHGV-0121285_10	Structural annotation	PF00679, MF_00707, NF010078, COG3870	NA	NA
UHGV-0121285_12	PHROG	phrog_7429	NA	unknown function
UHGV-0121285_12	eggNOG-mapper	1121098.HMPREF1534_03385	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate	NA
UHGV-0121285_12	COG	COG0178	Excinuclease UvrABC ATPase subunit	NA
UHGV-0121285_12	Structural annotation	PF00684	NA	NA
UHGV-0121285_13	eggNOG-mapper	1121101.HMPREF1532_03597	NA	NA
UHGV-0121285_13	Structural annotation	NF010301	NA	NA
UHGV-0121285_14	eggNOG-mapper	1121098.HMPREF1534_03383	NA	NA
UHGV-0121285_16	PHROG	phrog_1273	NA	unknown function
UHGV-0121285_16	eggNOG-mapper	272559.BF9343_1389	NA	NA
UHGV-0121285_17	PHROG	phrog_14123	NA	unknown function
UHGV-0121285_17	eggNOG-mapper	1121101.HMPREF1532_03592	NA	NA
UHGV-0121285_18	PHROG	phrog_846	NA	unknown function
UHGV-0121285_18	UniRef90	UniRef90_UPI00101CA50E	NA	NA
UHGV-0121285_18	eggNOG-mapper	1121101.HMPREF1532_03591	NA	NA
UHGV-0121285_18	Pfam	PF11363	NA	DUF3164
UHGV-0121285_18	Structural annotation	PF11363	NA	NA
UHGV-0121285_19	PHROG	phrog_17154	NA	unknown function
UHGV-0121285_19	UniRef90	UniRef90_A0A7C9HPY0	Transposase	NA
UHGV-0121285_19	eggNOG-mapper	1121098.HMPREF1534_03376	NA	NA
UHGV-0121285_20	PHROG	phrog_6911	NA	unknown function
UHGV-0121285_20	eggNOG-mapper	1121098.HMPREF1534_03375	NA	NA
UHGV-0121285_20	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0121285_21	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-0121285_21	UniRef90	UniRef90_UPI0006C36FAD	phage virion morphogenesis protein	NA
UHGV-0121285_21	eggNOG-mapper	1121101.HMPREF1532_03587	Phage virion morphogenesis	NA
UHGV-0121285_21	COG	COG5005	NA	NA
UHGV-0121285_21	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-0121285_22	eggNOG-mapper	1121098.HMPREF1534_03373	NA	NA
UHGV-0121285_23	PHROG	phrog_28631	NA	unknown function
UHGV-0121285_23	UniRef90	UniRef90_UPI00101C857E	toxin glutamine deamidase domain-containing protein	NA
UHGV-0121285_23	eggNOG-mapper	483215.BACFIN_05939	NA	NA
UHGV-0121285_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0121285_23	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0121285_23	COG	COG2369	NA	NA
UHGV-0121285_23	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0121285_24	PHROG	phrog_35074	NA	unknown function
UHGV-0121285_24	UniRef90	UniRef90_UPI00101D31F8	NA	NA
UHGV-0121285_24	eggNOG-mapper	1121101.HMPREF1532_03584	NA	NA
UHGV-0121285_24	Pfam	PF06074	NA	DUF935
UHGV-0121285_24	COG	COG4383	NA	NA
UHGV-0121285_24	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0121285_25	PHROG	phrog_195	head-tail adaptor	connector
UHGV-0121285_25	UniRef90	UniRef90_UPI00101E13F5	NA	NA
UHGV-0121285_25	eggNOG-mapper	1121101.HMPREF1532_03583	NA	NA
UHGV-0121285_25	Pfam	PF07030	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
UHGV-0121285_25	COG	COG4387	NA	NA
UHGV-0121285_25	Structural annotation	PF07030, COG4387	NA	NA
UHGV-0121285_26	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0121285_26	UniRef90	UniRef90_A0A0P0M5Z3	NA	NA
UHGV-0121285_26	eggNOG-mapper	1121101.HMPREF1532_03582	NA	NA
UHGV-0121285_26	COG	COG5362	Phage terminase large subunit	NA
UHGV-0121285_26	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5323	NA	NA
UHGV-0121285_27	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121285_27	UniRef90	UniRef90_UPI001C0368F1	helix-turn-helix domain-containing protein	NA
UHGV-0121285_27	eggNOG-mapper	1121098.HMPREF1534_03368	NA	NA
UHGV-0121285_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0121285_27	COG	COG5484	NA	NA
UHGV-0121285_27	Structural annotation	PF06056	NA	NA
UHGV-0121285_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0121285_28	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-0121285_28	UniRef90	UniRef90_UPI00101D74B9	Clp protease ClpP	NA
UHGV-0121285_28	eggNOG-mapper	1121101.HMPREF1532_03580	NA	NA
UHGV-0121285_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0121285_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0121285_28	Structural annotation	PF00574, PF10123, MF_00444, NF011090, COG0740	NA	NA
UHGV-0121285_29	PHROG	phrog_11320	NA	unknown function
UHGV-0121285_29	UniRef90	UniRef90_A0A015VWG8	Bacteroidetes-Associated Carbohydrate-binding Often N-terminal family protein	NA
UHGV-0121285_29	eggNOG-mapper	1121098.HMPREF1534_03366	NA	NA
UHGV-0121285_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0121285_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0121285_30	PHROG	phrog_822	amidase	lysis
UHGV-0121285_30	UniRef90	UniRef90_UPI00101BE810	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121285_30	eggNOG-mapper	762968.HMPREF9441_03617	NA	NA
UHGV-0121285_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0121285_30	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0121285_30	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0121285_31	eggNOG-mapper	1122971.BAME01000043_gene3762	NA	NA
UHGV-0121285_32	PHROG	phrog_6767	NA	unknown function
UHGV-0121285_32	eggNOG-mapper	585502.HMPREF0645_2501	NA	NA
UHGV-0121285_32	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0121285_33	PHROG	phrog_14983	NA	unknown function
UHGV-0121285_33	eggNOG-mapper	1121098.HMPREF1534_03360	NA	NA
UHGV-0121285_33	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0121285_34	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0121285_34	PHROG	phrog_14295	NA	unknown function
UHGV-0121285_34	UniRef90	UniRef90_A0A0P0M5R3	Response regulator receiver	NA
UHGV-0121285_34	eggNOG-mapper	1287476.HMPREF1651_06180	protein involved in control of spindle dynamics together with kar3p K00870	NA
UHGV-0121285_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0121285_35	PHROG	phrog_6305	tail protein	tail
UHGV-0121285_35	eggNOG-mapper	457424.BFAG_03297	NA	NA
UHGV-0121285_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0121285_36	PHROG	phrog_22546	NA	unknown function
UHGV-0121285_36	eggNOG-mapper	1121098.HMPREF1534_03357	Phage minor structural protein	NA
UHGV-0121285_36	COG	COG4926	Phage-related protein	NA
UHGV-0121285_36	Structural annotation	PF14594, PF04300, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0121285_37	UniRef90	UniRef90_A0A015U0Z1	Putative alkylhydroperoxidase AhpD core	NA
UHGV-0121285_37	eggNOG-mapper	1121098.HMPREF1534_03356	NA	NA
UHGV-0121285_38	KOfam	K21449	ata, sadA, emaA; trimeric autotransporter adhesin	NA
UHGV-0121285_38	PHROG	phrog_14959	NA	unknown function
UHGV-0121285_38	UniRef90	UniRef90_UPI001C018394	CotH kinase family protein	NA
UHGV-0121285_38	eggNOG-mapper	457424.BFAG_03294	NA	NA
UHGV-0121285_38	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0121285_39	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0121285_39	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0121285_39	UniRef90	UniRef90_A0A6L8Z5B0	Reverse transcriptase domain-containing protein	NA
UHGV-0121285_39	eggNOG-mapper	762968.HMPREF9441_02381	NA	NA
UHGV-0121285_39	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0121285_39	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0121285_39	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0121285_39	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0121285_40	PHROG	phrog_19239	NA	unknown function
UHGV-0121285_40	eggNOG-mapper	1121098.HMPREF1534_03352	NA	NA
UHGV-0121285_40	Structural annotation	PF14301	NA	NA
UHGV-0121285_41	PHROG	phrog_37688	NA	unknown function
UHGV-0121285_43	PHROG	phrog_17790	NA	unknown function
UHGV-0121285_43	UniRef90	UniRef90_A0A174QG70	Mor transcription activator domain-containing protein	NA
UHGV-0121285_43	eggNOG-mapper	1121098.HMPREF1534_03351	NA	NA
UHGV-0121285_44	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0121285_44	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0121285_44	UniRef90	UniRef90_A0A174QC79	Thymidylate synthase	NA
UHGV-0121285_44	eggNOG-mapper	762984.HMPREF9445_02501	NA	NA
UHGV-0121285_44	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0121285_44	COG	COG0207	Thymidylate synthase	NA
UHGV-0121285_44	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA
UHGV-0121285_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0121285_45	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0121285_45	UniRef90	UniRef90_UPI001C01093D	DNA adenine methylase	NA
UHGV-0121285_45	eggNOG-mapper	1121101.HMPREF1532_03563	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0121285_45	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-0121285_45	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0121285_45	COG	COG0338	DNA-adenine methylase	NA
UHGV-0121285_45	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0121285_46	KOfam	K20997	pslA; polysaccharide biosynthesis protein PslA	NA
UHGV-0121285_46	UniRef90	UniRef90_C3QJI2	Bacterial sugar transferase	NA
UHGV-0121285_46	eggNOG-mapper	411476.BACOVA_03791	COG COG2148 Sugar transferases involved in lipopolysaccharide synthesis	NA
UHGV-0121285_46	Pfam	PF02397	Bacterial sugar transferase	Bac_transf
UHGV-0121285_46	COG	COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	NA