UHGV-0121331

Genome information

Genome length 39,138 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121331
vOTU ID	vOTU-014176
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285938
BioSample	SAMEA4378270
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.38
Jumbo phage	No

Genome content
Genome length	39,138 bps
GC content	38.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.59%
Average CDS length	645.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121331_1	PHROG	phrog_14030	NA	unknown function
UHGV-0121331_1	UniRef90	UniRef90_UPI0018972B9E	peptidoglycan-binding protein	NA
UHGV-0121331_1	eggNOG-mapper	457412.RSAG_02810	NlpC/P60 family	NA
UHGV-0121331_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0121331_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0121331_1	Structural annotation	PF05382, PF01471, NF033742, NF038080, COG3409, COG0791	NA	NA
UHGV-0121331_2	PHROG	phrog_37799	NA	unknown function
UHGV-0121331_2	UniRef90	UniRef90_UPI00156F2401	phage holin family protein	NA
UHGV-0121331_2	eggNOG-mapper	1151292.QEW_0990	Bacteriophage holin family	NA
UHGV-0121331_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0121331_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0121331_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0121331_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0121331_3	PHROG	phrog_28526	NA	unknown function
UHGV-0121331_3	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0121331_3	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0121331_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0121331_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0121331_5	UniRef90	UniRef90_A0A374JNY7	Reverse transcriptase domain-containing protein	NA
UHGV-0121331_5	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0121331_5	PADLOC	pfam00078	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; acquisition_associated	CRISPR-CAS
UHGV-0121331_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0121331_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0121331_5	Structural annotation	PF00078, TIGR04416	NA	NA
UHGV-0121331_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0121331_7	PHROG	phrog_17147	NA	unknown function
UHGV-0121331_7	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0121331_7	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0121331_8	PHROG	phrog_16164	NA	unknown function
UHGV-0121331_8	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0121331_8	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0121331_11	PHROG	phrog_6616	tail protein	tail
UHGV-0121331_11	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0121331_11	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0121331_11	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0121331_12	PHROG	phrog_1194	NA	unknown function
UHGV-0121331_12	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0121331_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0121331_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0121331_13	UniRef90	UniRef90_A0A2Y9BKW0	Phage-related protein	NA
UHGV-0121331_13	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0121331_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0121331_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0121331_14	PHROG	phrog_8355	NA	unknown function
UHGV-0121331_14	UniRef90	UniRef90_UPI000E439FD7	Gp15 family bacteriophage protein	NA
UHGV-0121331_14	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0121331_15	PHROG	phrog_8300	NA	unknown function
UHGV-0121331_15	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0121331_15	Structural annotation	PF06854	NA	NA
UHGV-0121331_16	PHROG	phrog_820	major tail protein	tail
UHGV-0121331_16	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0121331_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0121331_17	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0121331_17	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0121331_17	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0121331_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0121331_17	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0121331_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0121331_18	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0121331_19	PHROG	phrog_8710	NA	unknown function
UHGV-0121331_19	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0121331_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0121331_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0121331_20	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0121331_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0121331_21	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0121331_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0121331_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0121331_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0121331_22	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0121331_23	PHROG	phrog_13199	NA	unknown function
UHGV-0121331_23	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0121331_25	eggNOG-mapper	887325.HMPREF0381_0084	Phage Mu protein F like protein	NA
UHGV-0121331_25	COG	COG2369	NA	NA
UHGV-0121331_26	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121331_26	UniRef90	UniRef90_UPI0013E35C2F	NUMOD4 domain-containing protein	NA
UHGV-0121331_26	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0121331_26	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0121331_26	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0121331_26	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0121331_26	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0121331_26	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0121331_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0121331_27	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0121331_27	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0121331_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0121331_27	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0121331_27	Structural annotation	PF06152	NA	NA
UHGV-0121331_28	PHROG	phrog_25639	NA	unknown function
UHGV-0121331_28	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0121331_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0121331_29	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0121331_29	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0121331_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0121331_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121331_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0121331_30	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-0121331_30	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0121331_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121331_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0121331_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0121331_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0121331_31	UniRef90	UniRef90_A0A415L5B5	Terminase small subunit	NA
UHGV-0121331_31	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0121331_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0121331_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0121331_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0121331_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121331_32	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-0121331_32	Pfam	PF07374	NA	DUF1492
UHGV-0121331_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0121331_33	PHROG	phrog_19011	NA	unknown function
UHGV-0121331_33	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0121331_34	PHROG	phrog_25754	NA	unknown function
UHGV-0121331_34	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-0121331_34	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0121331_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0121331_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0121331_36	UniRef90	UniRef90_A0A373MWF0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0121331_36	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0121331_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0121331_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0121331_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0121331_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0121331_37	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0121331_37	UniRef90	UniRef90_UPI000B16C6DA	DnaD domain protein	NA
UHGV-0121331_37	eggNOG-mapper	1140001.I571_01717	DnaD domain protein	NA
UHGV-0121331_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121331_37	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0121331_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121331_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121331_38	UniRef90	UniRef90_A0A7X2P517	Single-stranded DNA-binding protein	NA
UHGV-0121331_38	eggNOG-mapper	1042156.CXIVA_11530	Single-stranded DNA-binding protein	NA
UHGV-0121331_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121331_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121331_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121331_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121331_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0121331_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121331_39	UniRef90	UniRef90_A0A373IL66	Single-stranded DNA-binding protein	NA
UHGV-0121331_39	eggNOG-mapper	33035.JPJF01000122_gene2463	ERF superfamily	NA
UHGV-0121331_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0121331_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121331_39	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0121331_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0121331_40	UniRef90	UniRef90_UPI00051BA35F	siphovirus Gp157 family protein	NA
UHGV-0121331_40	eggNOG-mapper	33035.JPJF01000122_gene2464	Siphovirus Gp157	NA
UHGV-0121331_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0121331_40	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0121331_44	PHROG	phrog_6058	NA	unknown function
UHGV-0121331_44	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0121331_44	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-0121331_44	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0121331_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0121331_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0121331_45	UniRef90	UniRef90_UPI00041EF200	phage antirepressor	NA
UHGV-0121331_45	eggNOG-mapper	557436.Lreu_0803	BRO family, N-terminal domain	NA
UHGV-0121331_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0121331_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0121331_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0121331_45	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0121331_46	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0121331_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0121331_46	UniRef90	UniRef90_A0A3D2TUS5	Integrase	NA
UHGV-0121331_46	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0121331_46	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0121331_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121331_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0121331_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0121331_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121331_49	UniRef90	UniRef90_R7A0K7	XRE family Transcriptional regulator	NA
UHGV-0121331_49	eggNOG-mapper	742740.HMPREF9474_04328	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121331_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0121331_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0121331_49	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0121331_50	UniRef90	UniRef90_A0A1Y4NK06	Transcriptional regulator	NA
UHGV-0121331_50	eggNOG-mapper	1235792.C808_00647	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121331_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0121331_51	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0121331_51	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121331_51	UniRef90	UniRef90_A0A417D3V0	Type I site-specific deoxyribonuclease	NA
UHGV-0121331_51	eggNOG-mapper	1235802.C823_05685	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0121331_51	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0121331_51	COG	COG4748	NA	NA
UHGV-0121331_52	PHROG	phrog_27136	NA	unknown function
UHGV-0121331_52	UniRef90	UniRef90_UPI000A966D6C	Zn-ribbon domain-containing protein	NA
UHGV-0121331_52	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-0121331_53	KOfam	K14059	int; integrase	NA
UHGV-0121331_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0121331_53	UniRef90	UniRef90_UPI00189A780D	tyrosine-type recombinase/integrase	NA
UHGV-0121331_53	eggNOG-mapper	411460.RUMTOR_02457	NA	NA
UHGV-0121331_53	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0121331_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121331_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121331_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA