UHGV-0121332

Genome information

Genome length 34,911 bps

CDS count 51

Completeness 98.45% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121332
vOTU ID	vOTU-076068
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285939
BioSample	SAMEA4378270
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.45% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.44
Jumbo phage	No

Genome content
Genome length	34,911 bps
GC content	38.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.32%
Average CDS length	622.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121332_1	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0121332_1	PHROG	phrog_35436	amidase	lysis
UHGV-0121332_1	UniRef90	UniRef90_UPI001D016E56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121332_1	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0121332_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0121332_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0121332_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0121332_2	PHROG	phrog_18218	NA	unknown function
UHGV-0121332_2	UniRef90	UniRef90_A0A3E4LX14	Ribonuclease	NA
UHGV-0121332_2	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0121332_2	Structural annotation	PF06946	NA	NA
UHGV-0121332_3	PHROG	phrog_1863	NA	unknown function
UHGV-0121332_3	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0121332_3	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0121332_4	PHROG	phrog_3639	minor tail protein	tail
UHGV-0121332_6	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0121332_6	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0121332_6	eggNOG-mapper	903814.ELI_1315	Collagen triple helix repeat (20 copies)	NA
UHGV-0121332_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0121332_6	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0121332_6	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0121332_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0121332_7	UniRef90	UniRef90_UPI0005A8CFC8	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0121332_7	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0121332_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0121332_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0121332_8	PHROG	phrog_5339	virion structural protein	head and packaging
UHGV-0121332_8	UniRef90	UniRef90_A0A0U2WUF0	Phage-related protein	NA
UHGV-0121332_8	eggNOG-mapper	1499683.CCFF01000017_gene2563	COG NOG18825 non supervised orthologous group	NA
UHGV-0121332_8	Structural annotation	PF21567	NA	NA
UHGV-0121332_9	PHROG	phrog_36410	NA	unknown function
UHGV-0121332_9	UniRef90	UniRef90_A0A373JCA8	Phage tail family protein	NA
UHGV-0121332_9	eggNOG-mapper	33035.JPJF01000033_gene2264	PFAM Phage tail protein	NA
UHGV-0121332_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0121332_9	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0121332_10	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0121332_10	PHROG	phrog_5218	NA	unknown function
UHGV-0121332_10	UniRef90	UniRef90_A0A373J9F4	Phage tail tape measure protein	NA
UHGV-0121332_10	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0121332_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0121332_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0121332_11	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121332_11	UniRef90	UniRef90_A0A373JAG1	HNHc domain-containing protein	NA
UHGV-0121332_11	eggNOG-mapper	315730.BcerKBAB4_3417	regulation of methylation-dependent chromatin silencing	NA
UHGV-0121332_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0121332_11	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0121332_11	Structural annotation	PF05766	NA	NA
UHGV-0121332_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0121332_12	UniRef90	UniRef90_A0A373JB13	Phage tail tape measure protein	NA
UHGV-0121332_12	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-0121332_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0121332_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0121332_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0121332_13	PHROG	phrog_706	NA	unknown function
UHGV-0121332_13	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0121332_13	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0121332_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0121332_13	Structural annotation	PF06854	NA	NA
UHGV-0121332_14	PHROG	phrog_4450	NA	unknown function
UHGV-0121332_14	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-0121332_14	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0121332_14	Pfam	PF20378	NA	DUF6673
UHGV-0121332_14	Structural annotation	PF20378	NA	NA
UHGV-0121332_15	PHROG	phrog_3099	NA	unknown function
UHGV-0121332_15	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0121332_15	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0121332_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0121332_16	PHROG	phrog_3266	tail completion	connector
UHGV-0121332_16	UniRef90	UniRef90_A0A2N2DTS1	Chloramphenicol resistance protein	NA
UHGV-0121332_16	eggNOG-mapper	33035.JPJF01000033_gene2269	NA	NA
UHGV-0121332_16	Structural annotation	PF12691	NA	NA
UHGV-0121332_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0121332_17	UniRef90	UniRef90_A0A373JC64	Capsid protein	NA
UHGV-0121332_17	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0121332_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0121332_17	Structural annotation	PF11114	NA	NA
UHGV-0121332_18	PHROG	phrog_3366	NA	unknown function
UHGV-0121332_18	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0121332_18	Pfam	PF20536	NA	DUF6751
UHGV-0121332_18	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0121332_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0121332_19	Structural annotation	PF05135	NA	NA
UHGV-0121332_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0121332_20	eggNOG-mapper	742765.HMPREF9457_02127	NA	NA
UHGV-0121332_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0121332_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0121332_21	UniRef90	UniRef90_UPI001EE04F4B	phage scaffolding protein	NA
UHGV-0121332_21	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0121332_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0121332_21	Structural annotation	PF06810	NA	NA
UHGV-0121332_22	Structural annotation	PF14425	NA	NA
UHGV-0121332_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0121332_23	UniRef90	UniRef90_A0A373JAB0	Minor capsid protein	NA
UHGV-0121332_23	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-0121332_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0121332_23	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0121332_23	COG	COG2369	NA	NA
UHGV-0121332_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0121332_24	UniRef90	UniRef90_A0A373JBS6	Phage capsid protein	NA
UHGV-0121332_24	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0121332_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0121332_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121332_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0121332_25	UniRef90	UniRef90_A0A373J9L3	PBSX family phage terminase large subunit	NA
UHGV-0121332_25	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0121332_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0121332_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0121332_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121332_25	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0121332_26	PHROG	phrog_2412	NA	unknown function
UHGV-0121332_26	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0121332_26	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0121332_27	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0121332_27	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0121332_27	UniRef90	UniRef90_A0A373JC73	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0121332_27	eggNOG-mapper	411470.RUMGNA_03915	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0121332_27	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0121332_27	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0121332_27	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0121332_28	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0121332_28	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0121332_28	UniRef90	UniRef90_A0A373J9H4	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0121332_28	eggNOG-mapper	411469.EUBHAL_02628	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0121332_28	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0121332_28	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0121332_28	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0121332_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121332_29	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-0121332_29	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0121332_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0121332_29	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0121332_30	PHROG	phrog_19011	NA	unknown function
UHGV-0121332_30	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0121332_32	eggNOG-mapper	411470.RUMGNA_02044	NA	NA
UHGV-0121332_32	Structural annotation	PF02185	NA	NA
UHGV-0121332_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0121332_33	PHROG	phrog_29443	NA	unknown function
UHGV-0121332_33	UniRef90	UniRef90_UPI001C2DC3AD	DNA cytosine methyltransferase	NA
UHGV-0121332_33	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0121332_33	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0121332_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0121332_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0121332_33	Structural annotation	PF00145, MF_01857, TIGR00675, COG0270	NA	NA
UHGV-0121332_34	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0121332_34	UniRef90	UniRef90_UPI000E3E3572	DnaD domain protein	NA
UHGV-0121332_34	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0121332_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121332_35	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121332_35	UniRef90	UniRef90_UPI0001F01BA4	NA	NA
UHGV-0121332_35	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0121332_35	Pfam	PF06378	NA	DUF1071
UHGV-0121332_35	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0121332_39	PHROG	phrog_6058	NA	unknown function
UHGV-0121332_39	UniRef90	UniRef90_A0A374E7W1	XRE family transcriptional regulator	NA
UHGV-0121332_39	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0121332_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0121332_39	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0121332_40	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0121332_40	UniRef90	UniRef90_A0A373ILI2	Phage repressor protein	NA
UHGV-0121332_40	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0121332_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0121332_40	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0121332_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0121332_40	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0121332_44	eggNOG-mapper	870187.Thini_1984	NA	NA
UHGV-0121332_44	Structural annotation	PF04450, COG3975	NA	NA
UHGV-0121332_47	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-0121332_47	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0121332_47	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0121332_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0121332_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121332_48	UniRef90	UniRef90_A0A173ZB84	HTH-type transcriptional regulator immR	NA
UHGV-0121332_48	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121332_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121332_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0121332_48	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0121332_49	PHROG	phrog_87	metallo-protease	other
UHGV-0121332_49	UniRef90	UniRef90_A0A373INP4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0121332_49	eggNOG-mapper	1121115.AXVN01000006_gene2176	NA	NA
UHGV-0121332_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0121332_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0121332_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0121332_50	eggNOG-mapper	742765.HMPREF9457_02092	NA	NA
UHGV-0121332_50	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0121332_51	KOfam	K14059	int; integrase	NA
UHGV-0121332_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0121332_51	UniRef90	UniRef90_H7BVF7	Tyr recombinase domain-containing protein	NA
UHGV-0121332_51	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0121332_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121332_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121332_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA