UHGV-0121334

Genome information

Genome length 36,610 bps

CDS count 62

Completeness 97.42% (high-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121334
vOTU ID	vOTU-076070
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285934
BioSample	SAMEA4378270
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.93
Jumbo phage	No

Genome content
Genome length	36,610 bps
GC content	31.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.60%
Average CDS length	531.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121334_1	KOfam	K14059	int; integrase	NA
UHGV-0121334_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0121334_1	UniRef90	UniRef90_UPI0015714504	site-specific integrase	NA
UHGV-0121334_1	eggNOG-mapper	857293.CAAU_0761	Belongs to the 'phage' integrase family	NA
UHGV-0121334_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0121334_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121334_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121334_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0121334_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0121334_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121334_2	UniRef90	UniRef90_UPI000EA2E30C	helix-turn-helix domain-containing protein	NA
UHGV-0121334_2	eggNOG-mapper	1122221.JHVI01000004_gene148	transcriptional regulator	NA
UHGV-0121334_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121334_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0121334_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0121334_3	UniRef90	UniRef90_UPI000EA0E616	helix-turn-helix domain-containing protein	NA
UHGV-0121334_3	eggNOG-mapper	1123239.KB898623_gene1335	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0121334_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121334_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0121334_4	PHROG	phrog_7338	NA	unknown function
UHGV-0121334_4	UniRef90	UniRef90_A0A5C0SFH9	Helix-turn-helix domain-containing protein	NA
UHGV-0121334_4	eggNOG-mapper	931276.Cspa_c26540	Excisionase from transposon Tn916	NA
UHGV-0121334_4	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0121334_4	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0121334_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0121334_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0121334_5	UniRef90	UniRef90_UPI000C079E58	phage antirepressor	NA
UHGV-0121334_5	eggNOG-mapper	1415774.U728_781	Phage antirepressor protein KilAC domain	NA
UHGV-0121334_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0121334_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0121334_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0121334_5	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0121334_7	Structural annotation	PF18895, NF040614, COG0713	NA	NA
UHGV-0121334_12	PHROG	phrog_10625	NA	unknown function
UHGV-0121334_12	Structural annotation	PF14634	NA	NA
UHGV-0121334_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0121334_14	UniRef90	UniRef90_UPI000C084940	siphovirus Gp157 family protein	NA
UHGV-0121334_14	eggNOG-mapper	1499683.CCFF01000014_gene3558	Siphovirus Gp157	NA
UHGV-0121334_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0121334_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0121334_15	PHROG	phrog_14970	NA	unknown function
UHGV-0121334_15	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0121334_15	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0121334_15	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0121334_15	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0121334_15	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0121334_16	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0121334_16	UniRef90	UniRef90_A0A2H4JF78	Putative DNA replication protein	NA
UHGV-0121334_16	eggNOG-mapper	1415774.U728_1701	DnaD domain protein	NA
UHGV-0121334_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121334_16	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0121334_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0121334_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0121334_18	UniRef90	UniRef90_UPI000C074862	replicative DNA helicase	NA
UHGV-0121334_18	eggNOG-mapper	536233.CLO_1409	Participates in initiation and elongation during chromosome replication	NA
UHGV-0121334_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0121334_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0121334_18	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0121334_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0121334_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0121334_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121334_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121334_19	UniRef90	UniRef90_UPI000C087C34	single-stranded DNA-binding protein	NA
UHGV-0121334_19	eggNOG-mapper	1391647.AVSV01000022_gene2534	Single-stranded DNA-binding protein	NA
UHGV-0121334_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121334_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121334_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121334_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121334_19	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0121334_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0121334_20	eggNOG-mapper	536233.CLO_1554	sulfate reduction	NA
UHGV-0121334_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0121334_20	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0121334_22	PHROG	phrog_98	NA	unknown function
UHGV-0121334_22	UniRef90	UniRef90_UPI000C08CEB9	YopX family protein	NA
UHGV-0121334_22	eggNOG-mapper	1567011.A0A0A7RWK2_9VIRU	YopX protein	NA
UHGV-0121334_22	Pfam	PF09643	YopX protein	YopX
UHGV-0121334_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0121334_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0121334_24	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0121334_24	UniRef90	UniRef90_UPI0018A8EF5C	ERCC4 domain-containing protein	NA
UHGV-0121334_24	eggNOG-mapper	673376.F2VHU9_9CAUD	nuclease activity	NA
UHGV-0121334_24	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0121334_24	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0121334_25	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121334_25	UniRef90	UniRef90_A0A290GHM3	Metallophos domain-containing protein	NA
UHGV-0121334_27	PHROG	phrog_236	nucleotide kinase	other
UHGV-0121334_27	UniRef90	UniRef90_UPI001A9A39DC	NA	NA
UHGV-0121334_27	eggNOG-mapper	749413.E5DV94_9VIRU	NA	NA
UHGV-0121334_27	Pfam	PF11753	NA	DUF3310
UHGV-0121334_27	Structural annotation	PF11753	NA	NA
UHGV-0121334_28	eggNOG-mapper	1280692.AUJL01000004_gene866	NA	NA
UHGV-0121334_29	PHROG	phrog_10157	NA	unknown function
UHGV-0121334_29	UniRef90	UniRef90_UPI000C076F29	helix-turn-helix domain-containing protein	NA
UHGV-0121334_29	Structural annotation	PF04545, MF_00674, NF009180, COG2771	NA	NA
UHGV-0121334_30	PHROG	phrog_37916	NA	unknown function
UHGV-0121334_32	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0121334_32	UniRef90	UniRef90_UPI000C0728F3	phBC6A51 family helix-turn-helix protein	NA
UHGV-0121334_32	eggNOG-mapper	1391647.AVSV01000022_gene2554	NA	NA
UHGV-0121334_32	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0121334_32	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0121334_34	PHROG	phrog_11978	NA	unknown function
UHGV-0121334_34	UniRef90	UniRef90_A0A0C1R0Y0	Putative 6-phospho-beta-glucosidase BglA	NA
UHGV-0121334_34	eggNOG-mapper	1123405.AUMM01000039_gene155	TIGRFAM Phage	NA
UHGV-0121334_34	COG	COG5362	Phage terminase large subunit	NA
UHGV-0121334_34	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0121334_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0121334_35	UniRef90	UniRef90_UPI000EA3F913	phage portal protein	NA
UHGV-0121334_35	eggNOG-mapper	536233.CLO_1562	portal protein, SPP1 Gp6-like	NA
UHGV-0121334_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0121334_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0121334_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0121334_36	UniRef90	UniRef90_UPI000C06D26A	minor capsid protein	NA
UHGV-0121334_36	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-0121334_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0121334_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0121334_36	COG	COG2369	NA	NA
UHGV-0121334_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0121334_38	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0121334_38	UniRef90	UniRef90_UPI000C086442	NA	NA
UHGV-0121334_38	eggNOG-mapper	1415774.U728_1666	NA	NA
UHGV-0121334_38	Pfam	PF14265	NA	DUF4355
UHGV-0121334_38	Structural annotation	PF14265	NA	NA
UHGV-0121334_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0121334_39	UniRef90	UniRef90_A0A3P6KSI0	NA	NA
UHGV-0121334_39	eggNOG-mapper	1415774.U728_1665	NA	NA
UHGV-0121334_39	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0121334_40	eggNOG-mapper	1540257.JQMW01000013_gene740	NA	NA
UHGV-0121334_41	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0121334_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0121334_42	UniRef90	UniRef90_UPI000C06B6F1	HK97 gp10 family phage protein	NA
UHGV-0121334_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0121334_42	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0121334_43	Structural annotation	PF20765	NA	NA
UHGV-0121334_44	PHROG	phrog_885	major tail protein	tail
UHGV-0121334_44	UniRef90	UniRef90_K0G4J0	Gp11	NA
UHGV-0121334_44	eggNOG-mapper	574376.BAMA_15760	NA	NA
UHGV-0121334_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0121334_45	PHROG	phrog_1021	NA	unknown function
UHGV-0121334_47	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0121334_47	UniRef90	UniRef90_F8UBI0	Phage-related minor tail protein	NA
UHGV-0121334_47	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0121334_47	Pfam	PF05017	TMP repeat	TMP
UHGV-0121334_47	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0121334_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0121334_48	UniRef90	UniRef90_UPI000C0747FD	phage tail family protein	NA
UHGV-0121334_48	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0121334_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0121334_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0121334_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0121334_49	PHROG	phrog_7043	tail protein	tail
UHGV-0121334_49	UniRef90	UniRef90_UPI000C06FD7A	phage tail protein	NA
UHGV-0121334_49	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0121334_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0121334_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0121334_49	COG	COG4926	Phage-related protein	NA
UHGV-0121334_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0121334_51	PHROG	phrog_16573	NA	unknown function
UHGV-0121334_51	UniRef90	UniRef90_UPI000EA0605D	BppU family phage baseplate upper protein	NA
UHGV-0121334_51	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0121334_51	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0121334_51	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0121334_52	PHROG	phrog_18037	NA	unknown function
UHGV-0121334_52	Structural annotation	PF07041	NA	NA
UHGV-0121334_53	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0121334_53	UniRef90	UniRef90_UPI000C082100	BhlA/UviB family holin-like peptide	NA
UHGV-0121334_53	eggNOG-mapper	1294142.CINTURNW_0311	BhlA holin family	NA
UHGV-0121334_53	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0121334_54	PHROG	phrog_34399	NA	unknown function
UHGV-0121334_54	UniRef90	UniRef90_A0A0A2HDK2	Membrane protein	NA
UHGV-0121334_54	eggNOG-mapper	536232.CLM_1681	NA	NA
UHGV-0121334_55	KOfam	K07273	acm; lysozyme	NA
UHGV-0121334_55	PHROG	phrog_6219	endolysin	lysis
UHGV-0121334_55	UniRef90	UniRef90_UPI000EA2B524	glycoside hydrolase	NA
UHGV-0121334_55	eggNOG-mapper	1294142.CINTURNW_1949	family 25	NA
UHGV-0121334_55	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0121334_55	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0121334_55	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0121334_56	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0121334_56	UniRef90	UniRef90_A0A6B4V8Z2	Helix-turn-helix transcriptional regulator	NA
UHGV-0121334_56	eggNOG-mapper	748727.CLJU_c00470	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121334_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121334_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0121334_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0121334_57	eggNOG-mapper	1211817.CCAT010000010_gene2301	ftsk spoiiie	NA
UHGV-0121334_57	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0121334_58	PHROG	phrog_942	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0121334_58	UniRef90	UniRef90_UPI001EFB3F84	Rep protein	NA
UHGV-0121334_58	eggNOG-mapper	908340.HMPREF9406_1269	NA	NA
UHGV-0121334_58	Structural annotation	PF21578	NA	NA
UHGV-0121334_61	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0121334_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121334_61	UniRef90	UniRef90_UPI000DCFF08B	helix-turn-helix domain-containing protein	NA
UHGV-0121334_61	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0121334_61	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0121334_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121334_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA