UHGV-0121356

Genome information

Genome length 34,893 bps

CDS count 44

Completeness 76.71% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121356
vOTU ID	vOTU-040993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_276763
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.39
Jumbo phage	No

Genome content
Genome length	34,893 bps
GC content	47.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.50%
Average CDS length	744.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121356_1	PHROG	phrog_2801	NA	unknown function
UHGV-0121356_1	UniRef90	UniRef90_A0A3A6K2P7	AAA_13 domain-containing protein	NA
UHGV-0121356_1	eggNOG-mapper	1408324.JNJK01000006_gene1351	AAA domain	NA
UHGV-0121356_1	Pfam	PF13166	AAA domain	AAA_13
UHGV-0121356_1	COG	COG4694	Wobble nucleotide-excising tRNase	NA
UHGV-0121356_1	Structural annotation	PF13166, MF_00449, TIGR03185, COG4694	NA	NA
UHGV-0121356_2	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0121356_2	UniRef90	UniRef90_A0A174K1U0	DNA binding domain, excisionase family	NA
UHGV-0121356_2	eggNOG-mapper	1408324.JNJK01000006_gene1350	Helix-turn-helix domain	NA
UHGV-0121356_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0121356_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0121356_2	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0121356_2	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0121356_3	eggNOG-mapper	1408324.JNJK01000006_gene1349	TIR domain	NA
UHGV-0121356_3	COG	COG4916	NA	NA
UHGV-0121356_4	eggNOG-mapper	1408324.JNJK01000006_gene1348	NA	NA
UHGV-0121356_5	PHROG	phrog_13787	NA	unknown function
UHGV-0121356_5	UniRef90	UniRef90_A0A416LIJ5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0121356_5	eggNOG-mapper	515620.EUBELI_01534	NA	NA
UHGV-0121356_5	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0121356_5	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-0121356_6	PHROG	phrog_408	NA	unknown function
UHGV-0121356_6	UniRef90	UniRef90_A0A7X9C5Z2	DNA ligase	NA
UHGV-0121356_6	eggNOG-mapper	515620.EUBELI_01535	NOG23194 non supervised orthologous group	NA
UHGV-0121356_7	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121356_7	UniRef90	UniRef90_A0A3A6KCN9	NA	NA
UHGV-0121356_7	eggNOG-mapper	742741.HMPREF9475_02396	NA	NA
UHGV-0121356_7	Pfam	PF10926	NA	DUF2800
UHGV-0121356_7	COG	COG2887	RecB family exonuclease	NA
UHGV-0121356_7	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0121356_8	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121356_8	UniRef90	UniRef90_A0A373XR23	NA	NA
UHGV-0121356_8	eggNOG-mapper	515620.EUBELI_01539	NA	NA
UHGV-0121356_8	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0121356_8	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0121356_9	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0121356_9	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0121356_9	UniRef90	UniRef90_K1SJL1	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0121356_9	eggNOG-mapper	552396.HMPREF0863_01418	DNA polymerase	NA
UHGV-0121356_9	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0121356_9	Structural annotation	PF01612, MF_00977, TIGR00573, COG0847	NA	NA
UHGV-0121356_10	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0121356_10	PHROG	phrog_10285	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0121356_10	UniRef90	UniRef90_U5F7F5	POLAc domain-containing protein	NA
UHGV-0121356_10	eggNOG-mapper	552396.HMPREF0863_01418	DNA polymerase	NA
UHGV-0121356_10	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0121356_10	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0121356_10	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0121356_11	eggNOG-mapper	552396.HMPREF0863_01420	NA	NA
UHGV-0121356_12	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0121356_12	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0121356_12	UniRef90	UniRef90_A0A2T3FP06	DNA primase	NA
UHGV-0121356_12	eggNOG-mapper	552396.HMPREF0863_01421	Phage plasmid primase, P4 family	NA
UHGV-0121356_12	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0121356_12	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0121356_12	Pfam	PF19263	NA	DUF5906
UHGV-0121356_12	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0121356_12	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0121356_12	Structural annotation	PF04735, MF_00974, MF_04000, NF005477, COG3378, COG0358	NA	NA
UHGV-0121356_13	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121356_13	UniRef90	UniRef90_A0A2T3FP15	Nuclease	NA
UHGV-0121356_13	eggNOG-mapper	552396.HMPREF0863_01422	VRR-NUC domain protein	NA
UHGV-0121356_13	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0121356_14	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0121356_14	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0121356_14	UniRef90	UniRef90_U5F7F9	Helicase ATP-binding domain-containing protein	NA
UHGV-0121356_14	eggNOG-mapper	552396.HMPREF0863_01423	SNF2 family N-terminal domain	NA
UHGV-0121356_14	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0121356_14	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0121356_14	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0121356_14	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0121356_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121356_15	UniRef90	UniRef90_A0A3N0HWA5	NA	NA
UHGV-0121356_15	eggNOG-mapper	552396.HMPREF0863_01424	sigma factor activity	NA
UHGV-0121356_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0121356_15	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0121356_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0121356_16	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121356_16	UniRef90	UniRef90_A0A2T3FP00	HNH endonuclease	NA
UHGV-0121356_16	eggNOG-mapper	908340.HMPREF9406_0157	HNH endonuclease	NA
UHGV-0121356_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0121356_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0121356_16	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0121356_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0121356_17	UniRef90	UniRef90_A0A1I6LY77	Phage terminase, small subunit	NA
UHGV-0121356_17	eggNOG-mapper	552396.HMPREF0863_01426	NA	NA
UHGV-0121356_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0121356_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0121356_18	eggNOG-mapper	1235802.C823_05289	NA	NA
UHGV-0121356_19	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0121356_19	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0121356_19	UniRef90	UniRef90_U5F806	Methyltransferase	NA
UHGV-0121356_19	eggNOG-mapper	552396.HMPREF0863_01428	DNA methylase	NA
UHGV-0121356_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0121356_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0121356_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0121356_19	COG	COG0863	DNA modification methylase	NA
UHGV-0121356_19	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0121356_20	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0121356_20	UniRef90	UniRef90_A0A2T3FP20	Virulence protein	NA
UHGV-0121356_20	eggNOG-mapper	665950.HMPREF1025_02644	NA	NA
UHGV-0121356_20	AcrCatalog	cluster_14489	NA	NA
UHGV-0121356_21	PHROG	phrog_3782	NA	unknown function
UHGV-0121356_21	UniRef90	UniRef90_A0A2T3FNZ8	NA	NA
UHGV-0121356_21	eggNOG-mapper	552396.HMPREF0863_01430	NA	NA
UHGV-0121356_21	Pfam	PF14192	NA	DUF4314
UHGV-0121356_21	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0121356_21	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0121356_23	PHROG	phrog_13182	NA	unknown function
UHGV-0121356_23	eggNOG-mapper	1449050.JNLE01000003_gene1085	NA	NA
UHGV-0121356_25	PHROG	phrog_21141	NA	unknown function
UHGV-0121356_25	eggNOG-mapper	1265507.KB899636_gene1654	NA	NA
UHGV-0121356_25	AcrCatalog	cluster_19223	NA	NA
UHGV-0121356_25	Structural annotation	PF04232, MF_01122, NF003088	NA	NA
UHGV-0121356_26	PHROG	phrog_4709	NA	unknown function
UHGV-0121356_26	eggNOG-mapper	397288.C806_01504	NA	NA
UHGV-0121356_26	AcrCatalog	cluster_3300	NA	NA
UHGV-0121356_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0121356_27	UniRef90	UniRef90_A0A1I6KUH9	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0121356_27	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-0121356_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0121356_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0121356_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0121356_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0121356_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0121356_28	UniRef90	UniRef90_A0A2T3FP24	Phage portal protein	NA
UHGV-0121356_28	eggNOG-mapper	742741.HMPREF9475_02376	Phage portal protein	NA
UHGV-0121356_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0121356_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0121356_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0121356_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0121356_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0121356_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0121356_29	UniRef90	UniRef90_A0A2T3FP02	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0121356_29	eggNOG-mapper	1265507.KB899636_gene1658	Clp protease	NA
UHGV-0121356_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0121356_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0121356_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0121356_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0121356_30	UniRef90	UniRef90_A0A2T3FP01	Phage major capsid protein	NA
UHGV-0121356_30	eggNOG-mapper	1265507.KB899637_gene608	capsid protein	NA
UHGV-0121356_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0121356_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0121356_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0121356_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0121356_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0121356_31	UniRef90	UniRef90_A0A2T3FP12	AraC family transcriptional regulator	NA
UHGV-0121356_31	eggNOG-mapper	742741.HMPREF9475_02373	Phage gp6-like head-tail connector protein	NA
UHGV-0121356_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0121356_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0121356_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0121356_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-0121356_32	UniRef90	UniRef90_A0A2T3FNX9	Head-tail adaptor protein	NA
UHGV-0121356_32	eggNOG-mapper	742741.HMPREF9475_02372	Phage head-tail joining protein	NA
UHGV-0121356_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0121356_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0121356_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0121356_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0121356_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0121356_33	UniRef90	UniRef90_UPI0011CB9C6E	HK97 gp10 family phage protein	NA
UHGV-0121356_33	eggNOG-mapper	742741.HMPREF9475_02371	COG NOG18351 non supervised orthologous group	NA
UHGV-0121356_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0121356_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0121356_34	PHROG	phrog_78	tail terminator	connector
UHGV-0121356_34	eggNOG-mapper	742741.HMPREF9475_02370	NA	NA
UHGV-0121356_34	Structural annotation	PF20765	NA	NA
UHGV-0121356_35	PHROG	phrog_88	major tail protein	tail
UHGV-0121356_35	UniRef90	UniRef90_A0A2T3FP07	Phage tail protein	NA
UHGV-0121356_35	eggNOG-mapper	742741.HMPREF9475_02369	phage major tail protein, phi13 family	NA
UHGV-0121356_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0121356_35	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0121356_36	PHROG	phrog_709	NA	unknown function
UHGV-0121356_36	eggNOG-mapper	742741.HMPREF9475_02368	NA	NA
UHGV-0121356_36	Structural annotation	PF11836	NA	NA
UHGV-0121356_37	PHROG	phrog_3033	NA	unknown function
UHGV-0121356_37	eggNOG-mapper	742741.HMPREF9475_02367	NA	NA
UHGV-0121356_38	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0121356_38	PHROG	phrog_2737	NA	unknown function
UHGV-0121356_38	UniRef90	UniRef90_A0A173SHG1	Addiction module antitoxin, RelB/DinJ family	NA
UHGV-0121356_38	eggNOG-mapper	457412.RSAG_02440	RelB antitoxin	NA
UHGV-0121356_38	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0121356_38	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0121356_38	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0121356_38	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0121356_39	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0121356_39	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0121356_39	UniRef90	UniRef90_A0A173XLZ0	mRNA interferase YafQ	NA
UHGV-0121356_39	eggNOG-mapper	457412.RSAG_02439	Bacterial toxin of type II toxin-antitoxin system, YafQ	NA
UHGV-0121356_39	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0121356_39	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0121356_39	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0121356_39	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0121356_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0121356_40	UniRef90	UniRef90_A0A2T3FP34	Phage tail tape measure protein	NA
UHGV-0121356_40	eggNOG-mapper	742741.HMPREF9475_02364	Phage tail tape measure protein, TP901 family	NA
UHGV-0121356_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0121356_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0121356_40	COG	COG5283	Phage-related tail protein	NA
UHGV-0121356_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0121356_41	PHROG	phrog_1194	NA	unknown function
UHGV-0121356_41	eggNOG-mapper	483218.BACPEC_01319	NA	NA
UHGV-0121356_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0121356_42	PHROG	phrog_23052	NA	unknown function
UHGV-0121356_42	eggNOG-mapper	483218.BACPEC_01320	NA	NA
UHGV-0121356_42	Structural annotation	PF14879, PF09931, NF033848, TIGR03721, COG3500, COG4935	NA	NA
UHGV-0121356_43	UniRef90	UniRef90_UPI0018994E65	discoidin domain-containing protein	NA
UHGV-0121356_43	eggNOG-mapper	243164.DET1075	NA	NA
UHGV-0121356_44	PHROG	phrog_19291	NA	unknown function
UHGV-0121356_44	eggNOG-mapper	243164.DET1074	NA	NA