UHGV-0121357

Genome information

Genome length 34,608 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121357
vOTU ID	vOTU-045840
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292320
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.89
Jumbo phage	No

Genome content
Genome length	34,608 bps
GC content	39.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.33%
Average CDS length	650.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121357_3	PHROG	phrog_334	major head protein	head and packaging
UHGV-0121357_3	UniRef90	UniRef90_UPI001D06C453	N4-gp56 family major capsid protein	NA
UHGV-0121357_3	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0121357_3	Pfam	PF13252	NA	DUF4043
UHGV-0121357_3	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0121357_3	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0121357_4	Structural annotation	PF20387	NA	NA
UHGV-0121357_5	Structural annotation	PF20387	NA	NA
UHGV-0121357_6	eggNOG-mapper	1485543.JMME01000005_gene872	NA	NA
UHGV-0121357_6	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0121357_7	PHROG	phrog_6465	tail protein	tail
UHGV-0121357_7	UniRef90	UniRef90_UPI0018C60E32	tail fiber protein	NA
UHGV-0121357_7	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-0121357_7	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0121357_7	Structural annotation	PF20747	NA	NA
UHGV-0121357_8	Structural annotation	PF11039, MF_00084, NF000482, COG3818	NA	NA
UHGV-0121357_9	UniRef90	UniRef90_UPI001D07B8A4	Hint domain-containing protein	NA
UHGV-0121357_9	eggNOG-mapper	1123288.SOV_4c02760	NA	NA
UHGV-0121357_9	Pfam	PF13403	Hint domain	Hint_2
UHGV-0121357_9	Structural annotation	PF07591, NF038136, TIGR03017, COG4942	NA	NA
UHGV-0121357_11	PHROG	phrog_9854	NA	unknown function
UHGV-0121357_11	UniRef90	UniRef90_UPI001D087CF6	phage tail tip lysozyme	NA
UHGV-0121357_11	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-0121357_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0121357_11	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0121357_11	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0121357_11	Structural annotation	PF18857, PF18013	NA	NA
UHGV-0121357_12	UniRef90	UniRef90_UPI001D062352	phage holin family protein	NA
UHGV-0121357_12	eggNOG-mapper	883156.HMPREF9282_00970	Bacteriophage holin family	NA
UHGV-0121357_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0121357_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0121357_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0121357_13	PHROG	phrog_6745	endolysin	lysis
UHGV-0121357_13	UniRef90	UniRef90_UPI001D0872FD	glycosyl hydrolase family 25	NA
UHGV-0121357_13	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-0121357_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0121357_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0121357_13	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0121357_14	PHROG	phrog_10797	NA	unknown function
UHGV-0121357_14	UniRef90	UniRef90_UPI0018C518C1	glycoprotease	NA
UHGV-0121357_14	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0121357_14	Structural annotation	PF06531	NA	NA
UHGV-0121357_17	KOfam	K14059	int; integrase	NA
UHGV-0121357_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0121357_17	UniRef90	UniRef90_D1YMA1	Site-specific recombinase, phage integrase family	NA
UHGV-0121357_17	eggNOG-mapper	1401067.HMPREF0872_00475	Belongs to the 'phage' integrase family	NA
UHGV-0121357_17	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0121357_17	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0121357_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121357_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121357_17	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0121357_19	PHROG	phrog_87	metallo-protease	other
UHGV-0121357_19	UniRef90	UniRef90_UPI001D082CAF	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0121357_19	eggNOG-mapper	526218.Sterm_1388	IrrE N-terminal-like domain	NA
UHGV-0121357_19	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0121357_19	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0121357_19	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0121357_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0121357_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121357_20	UniRef90	UniRef90_UPI001D06C8D0	helix-turn-helix domain-containing protein	NA
UHGV-0121357_20	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0121357_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121357_20	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0121357_21	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0121357_21	UniRef90	UniRef90_UPI001D08DF46	helix-turn-helix domain-containing protein	NA
UHGV-0121357_21	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0121357_21	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0121357_21	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0121357_22	Structural annotation	NF007883	NA	NA
UHGV-0121357_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0121357_24	UniRef90	UniRef90_UPI001D094373	siphovirus Gp157 family protein	NA
UHGV-0121357_24	eggNOG-mapper	1227360.C176_12583	Siphovirus Gp157	NA
UHGV-0121357_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0121357_24	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0121357_25	PHROG	phrog_14970	NA	unknown function
UHGV-0121357_25	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0121357_25	eggNOG-mapper	428127.EUBDOL_01248	double-strand break repair protein	NA
UHGV-0121357_25	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0121357_25	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0121357_25	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0121357_26	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0121357_26	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0121357_26	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0121357_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0121357_27	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121357_27	UniRef90	UniRef90_UPI001D092C21	HNH endonuclease	NA
UHGV-0121357_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0121357_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0121357_27	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0121357_28	PHROG	phrog_1163	NA	unknown function
UHGV-0121357_28	UniRef90	UniRef90_UPI001D075DB7	conserved phage C-terminal domain-containing protein	NA
UHGV-0121357_28	eggNOG-mapper	1206110.L0P704_9CAUD	calcium ion binding	NA
UHGV-0121357_28	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0121357_28	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0121357_28	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0121357_29	PHROG	phrog_9804	NA	unknown function
UHGV-0121357_29	UniRef90	UniRef90_A0A7X9BQC1	Inhibitor_G39P domain-containing protein	NA
UHGV-0121357_29	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-0121357_30	UniRef90	UniRef90_UPI00115E7A3D	helix-turn-helix domain-containing protein	NA
UHGV-0121357_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121357_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0121357_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121357_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121357_31	UniRef90	UniRef90_UPI000750C286	single-stranded DNA-binding protein	NA
UHGV-0121357_31	eggNOG-mapper	936589.HMPREF1521_1228	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0121357_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121357_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121357_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121357_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121357_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0121357_32	Structural annotation	PF16857, MF_00273	NA	NA
UHGV-0121357_33	PHROG	phrog_1672	NA	unknown function
UHGV-0121357_34	PHROG	phrog_2776	NA	unknown function
UHGV-0121357_34	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0121357_34	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0121357_36	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0121357_36	UniRef90	UniRef90_A0A7C0U269	tRNA (Adenine-N(6)-)-methyltransferase	NA
UHGV-0121357_36	eggNOG-mapper	883156.HMPREF9282_00530	NA	NA
UHGV-0121357_36	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-0121357_36	Structural annotation	PF05869, MF_00607, TIGR01712, COG2263	NA	NA
UHGV-0121357_38	PHROG	phrog_21026	NA	unknown function
UHGV-0121357_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121357_39	UniRef90	UniRef90_UPI001D065A38	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0121357_39	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0121357_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0121357_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0121357_40	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0121357_40	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0121357_40	UniRef90	UniRef90_UPI001D07D29E	dUTP diphosphatase	NA
UHGV-0121357_40	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0121357_40	Pfam	PF00692	dUTPase	dUTPase
UHGV-0121357_40	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0121357_40	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0121357_40	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0121357_41	PHROG	phrog_774	NA	unknown function
UHGV-0121357_41	eggNOG-mapper	1042156.CXIVA_01820	NA	NA
UHGV-0121357_42	PHROG	phrog_3878	NA	unknown function
UHGV-0121357_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121357_43	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0121357_43	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0121357_43	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0121357_47	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0121357_47	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0121357_47	UniRef90	UniRef90_UPI001D073EE5	terminase small subunit	NA
UHGV-0121357_47	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0121357_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0121357_47	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0121357_47	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0121357_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121357_48	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0121357_48	UniRef90	UniRef90_UPI001D07F325	phage terminase large subunit	NA
UHGV-0121357_48	eggNOG-mapper	1121091.AUMP01000003_gene2581	Terminase-like family	NA
UHGV-0121357_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0121357_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121357_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0121357_50	PHROG	phrog_156	portal protein	head and packaging
UHGV-0121357_50	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0121357_50	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0121357_50	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0121357_50	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA