UHGV-0121422

Genome information

Genome length 25,411 bps

CDS count 41

Completeness 63.85% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121422
vOTU ID	vOTU-033770
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295556
BioSample	SAMEA4431896
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.17
Jumbo phage	No

Genome content
Genome length	25,411 bps
GC content	45.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.35%
Average CDS length	580.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121422_2	Structural annotation	PF17457	NA	NA
UHGV-0121422_7	PHROG	phrog_874	NA	unknown function
UHGV-0121422_7	UniRef90	UniRef90_UPI000CDA362A	ASCH domain-containing protein	NA
UHGV-0121422_7	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0121422_7	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0121422_8	KOfam	K04769	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	NA
UHGV-0121422_8	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0121422_8	UniRef90	UniRef90_UPI001D088EA4	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0121422_8	eggNOG-mapper	1298920.KI911353_gene2736	SpoVT / AbrB like domain	NA
UHGV-0121422_8	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0121422_8	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0121422_8	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0121422_8	Structural annotation	PF02381, TIGR01439, COG2002	NA	NA
UHGV-0121422_9	PHROG	phrog_17690	NA	unknown function
UHGV-0121422_9	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0121422_9	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0121422_10	PHROG	phrog_19011	NA	unknown function
UHGV-0121422_10	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0121422_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121422_12	Structural annotation	PF04545	NA	NA
UHGV-0121422_13	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0121422_13	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0121422_13	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0121422_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0121422_13	Structural annotation	PF16677	NA	NA
UHGV-0121422_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121422_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0121422_14	UniRef90	UniRef90_A0A7G5N2W3	Terminase	NA
UHGV-0121422_14	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0121422_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121422_14	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0121422_16	PHROG	phrog_28292	NA	unknown function
UHGV-0121422_16	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0121422_16	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0121422_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0121422_17	UniRef90	UniRef90_A0A7G5N2W0	Capsid protein	NA
UHGV-0121422_17	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0121422_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0121422_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0121422_18	UniRef90	UniRef90_A0A8G1TMC4	Minor capsid protein	NA
UHGV-0121422_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0121422_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0121422_18	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0121422_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0121422_18	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-0121422_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0121422_20	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0121422_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0121422_21	UniRef90	UniRef90_A0A4R4FE93	Capsid protein	NA
UHGV-0121422_21	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0121422_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0121422_22	PHROG	phrog_1378	NA	unknown function
UHGV-0121422_22	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0121422_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0121422_23	eggNOG-mapper	33035.JPJF01000093_gene2250	NA	NA
UHGV-0121422_24	PHROG	phrog_8710	NA	unknown function
UHGV-0121422_24	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0121422_24	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0121422_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0121422_25	eggNOG-mapper	33035.JPJF01000093_gene2248	NA	NA
UHGV-0121422_26	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0121422_26	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0121422_26	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0121422_26	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0121422_26	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0121422_27	PHROG	phrog_820	major tail protein	tail
UHGV-0121422_27	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0121422_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0121422_28	PHROG	phrog_8300	NA	unknown function
UHGV-0121422_28	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0121422_28	Structural annotation	PF06854	NA	NA
UHGV-0121422_29	PHROG	phrog_8355	NA	unknown function
UHGV-0121422_29	UniRef90	UniRef90_UPI00148B251E	Gp15 family bacteriophage protein	NA
UHGV-0121422_29	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0121422_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0121422_30	UniRef90	UniRef90_A0A2Y9BKW0	Phage-related protein	NA
UHGV-0121422_30	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0121422_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0121422_30	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0121422_31	PHROG	phrog_1194	NA	unknown function
UHGV-0121422_31	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0121422_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0121422_32	PHROG	phrog_6616	tail protein	tail
UHGV-0121422_32	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0121422_32	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0121422_32	COG	COG4926	Phage-related protein	NA
UHGV-0121422_32	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0121422_33	PHROG	phrog_11037	NA	unknown function
UHGV-0121422_33	UniRef90	UniRef90_A0A7G5N2U5	Peptidase M23	NA
UHGV-0121422_33	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0121422_33	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0121422_33	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0121422_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0121422_33	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0121422_34	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0121422_34	eggNOG-mapper	33035.JPJF01000093_gene2239	NA	NA
UHGV-0121422_35	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0121422_35	PHROG	phrog_6465	tail protein	tail
UHGV-0121422_35	UniRef90	UniRef90_UPI0018F61869	collagen-like protein	NA
UHGV-0121422_35	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0121422_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0121422_35	COG	COG4675	Phage tail collar domain	NA
UHGV-0121422_36	PHROG	phrog_12931	NA	unknown function
UHGV-0121422_37	Structural annotation	PF09693	NA	NA
UHGV-0121422_38	PHROG	phrog_16164	NA	unknown function
UHGV-0121422_38	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0121422_38	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0121422_39	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0121422_39	PHROG	phrog_819	tail protein	tail
UHGV-0121422_39	UniRef90	UniRef90_A0A7G5N2U2	Collagen-like protein	NA
UHGV-0121422_39	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0121422_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0121422_39	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0121422_40	PHROG	phrog_1863	NA	unknown function
UHGV-0121422_40	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0121422_41	eggNOG-mapper	33035.JPJF01000093_gene2233	Phage holin family Hol44, in holin superfamily V	NA