UHGV-0121541

Genome information

Genome length 33,041 bps

CDS count 47

Completeness 79.77% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121541
vOTU ID	vOTU-042404
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_275396
BioSample	SAMEA3879609
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.57
Jumbo phage	No

Genome content
Genome length	33,041 bps
GC content	52.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	88.44%
Average CDS length	626.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121541_1	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0121541_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0121541_3	PHROG	phrog_16490	NA	unknown function
UHGV-0121541_3	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0121541_4	PHROG	phrog_22984	NA	unknown function
UHGV-0121541_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0121541_7	PHROG	phrog_7698	endolysin	lysis
UHGV-0121541_7	UniRef90	UniRef90_A0A7D7GJS2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121541_7	eggNOG-mapper	1123315.AUIP01000001_gene1438	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0121541_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0121541_7	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0121541_7	COG	COG1388	LysM repeat	NA
UHGV-0121541_7	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0121541_8	PHROG	phrog_881	holin	lysis
UHGV-0121541_8	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0121541_8	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0121541_8	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0121541_8	Structural annotation	PF16938	NA	NA
UHGV-0121541_9	PHROG	phrog_1863	NA	unknown function
UHGV-0121541_9	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0121541_10	PHROG	phrog_372	tail protein	tail
UHGV-0121541_10	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0121541_10	eggNOG-mapper	1235796.C815_00905	NA	NA
UHGV-0121541_10	Pfam	PF05895	NA	DUF859
UHGV-0121541_10	Structural annotation	PF05895, PF08931, MF_04116, NF010681, COG3291	NA	NA
UHGV-0121541_11	PHROG	phrog_6616	tail protein	tail
UHGV-0121541_11	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0121541_11	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0121541_12	PHROG	phrog_1194	NA	unknown function
UHGV-0121541_12	UniRef90	UniRef90_A0A1Z5ISU0	NA	NA
UHGV-0121541_12	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0121541_12	Pfam	PF20458	NA	DUF6711
UHGV-0121541_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0121541_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0121541_13	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0121541_13	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0121541_13	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0121541_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0121541_14	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0121541_15	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0121541_15	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0121541_15	Pfam	PF16478	NA	DUF5055
UHGV-0121541_15	Structural annotation	PF16478	NA	NA
UHGV-0121541_16	PHROG	phrog_158	major tail protein	tail
UHGV-0121541_16	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0121541_16	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0121541_16	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0121541_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0121541_17	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0121541_18	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0121541_19	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0121541_20	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0121541_20	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0121541_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0121541_20	Structural annotation	TIGR01560	NA	NA
UHGV-0121541_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0121541_21	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0121541_21	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0121541_21	Pfam	PF17236	NA	DUF5309
UHGV-0121541_21	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0121541_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0121541_23	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0121541_23	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0121541_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0121541_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0121541_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0121541_24	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0121541_24	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0121541_24	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0121541_24	COG	COG5410	NA	NA
UHGV-0121541_24	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0121541_26	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0121541_26	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0121541_26	UniRef90	UniRef90_R6Y8B4	Resolvase N-terminal domain protein	NA
UHGV-0121541_26	eggNOG-mapper	411467.BACCAP_02922	Resolvase, N terminal domain	NA
UHGV-0121541_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0121541_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0121541_26	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0121541_28	PHROG	phrog_6244	NA	unknown function
UHGV-0121541_28	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0121541_30	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0121541_30	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0121541_30	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0121541_30	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0121541_32	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0121541_32	Structural annotation	TIGR01636	NA	NA
UHGV-0121541_34	UniRef90	UniRef90_UPI001654E08C	NA	NA
UHGV-0121541_34	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0121541_34	Pfam	PF04448	NA	DUF551
UHGV-0121541_37	PHROG	phrog_3136	NA	unknown function
UHGV-0121541_37	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0121541_37	Pfam	PF04266	ASCH domain	ASCH
UHGV-0121541_37	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0121541_39	PHROG	phrog_22529	NA	unknown function
UHGV-0121541_39	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0121541_39	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0121541_39	Pfam	PF06725	3D domain	3D
UHGV-0121541_39	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0121541_39	Structural annotation	PF06725, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0121541_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0121541_42	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121541_42	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0121541_42	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0121541_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0121541_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0121541_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0121541_44	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0121541_44	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0121541_44	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0121541_44	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0121541_44	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0121541_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0121541_44	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0121541_45	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0121541_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0121541_46	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0121541_46	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0121541_46	eggNOG-mapper	1449050.JNLE01000003_gene1760	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0121541_46	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0121541_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0121541_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0121541_47	eggNOG-mapper	1089548.KI783301_gene2722	NA	NA