UHGV-0121692

Genome information

Genome length 100,403 bps

CDS count 93

Completeness 100.00% (complete)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121692
vOTU ID	vOTU-000001
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292381
BioSample	SAMEA4431976
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.4
Jumbo phage	No

Genome content
Genome length	100,403 bps
GC content	29.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	93.48%
Average CDS length	1,012.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121692_1	UniRef90	UniRef90_A0A348JCN1	Putative ssb single stranded DNA-binding protein	NA
UHGV-0121692_1	Structural annotation	PF00436, MF_00984, NF005579	NA	NA
UHGV-0121692_4	UniRef90	UniRef90_A0A075TEY3	Orf00009 (Fragment)	NA
UHGV-0121692_9	Structural annotation	PF18350, MF_01326_A, TIGR00405, COG2139	NA	NA
UHGV-0121692_11	UniRef90	UniRef90_A0A059Q4D9	Orf00014	NA
UHGV-0121692_12	UniRef90	UniRef90_A0A059P8P2	Orf00015	NA
UHGV-0121692_12	Structural annotation	MF_00075, COG0361	NA	NA
UHGV-0121692_13	KOfam	K21499	dda; ATP-dependent DNA helicase [EC:5.6.2.3]	NA
UHGV-0121692_13	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0121692_13	UniRef90	UniRef90_A0A348JCP1	Putative DNA helicase	NA
UHGV-0121692_13	eggNOG-mapper	484022.Fphi_1038	PIF1-like helicase	NA
UHGV-0121692_13	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0121692_13	Pfam	PF13604	AAA domain	AAA_30
UHGV-0121692_13	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-0121692_13	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0121692_13	Structural annotation	PF13604, MF_01488, TIGR01448, COG0507	NA	NA
UHGV-0121692_14	UniRef90	UniRef90_A0A348JCP2	Putative uracil-DNA glycosylase	NA
UHGV-0121692_14	Structural annotation	PF03167, MF_01956, NF040953, COG1573	NA	NA
UHGV-0121692_15	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0121692_15	UniRef90	UniRef90_A0A3E1NMX6	DNA_pol_B domain-containing protein	NA
UHGV-0121692_15	eggNOG-mapper	1327990.S0A384_9CAUD	nucleic acid binding	NA
UHGV-0121692_16	UniRef90	UniRef90_A0A7S5R400	GIY-YIG domain-containing protein	NA
UHGV-0121692_16	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0121692_16	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0121692_17	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0121692_17	UniRef90	UniRef90_A0A7M1RX09	DNA polymerase family B	NA
UHGV-0121692_17	eggNOG-mapper	1540098.A0A0A0RW10_9CAUD	nucleic acid binding	NA
UHGV-0121692_18	UniRef90	UniRef90_A0A348JCP4	Putative SWI2/SNF2 ATPase, non-canonical Walker A motif	NA
UHGV-0121692_18	Structural annotation	PF16203, PF08351, MF_01489, NF010337, COG1111	NA	NA
UHGV-0121692_19	UniRef90	UniRef90_A0A348JCP5	Putative RecT phage RecT recombinase	NA
UHGV-0121692_20	UniRef90	UniRef90_A0A8F0WBU7	Recombination endonuclease	NA
UHGV-0121692_21	UniRef90	UniRef90_A0A7S8FJR7	Putative single stranded DNA-binding protein	NA
UHGV-0121692_22	PHROG	phrog_12622	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0121692_22	UniRef90	UniRef90_A0A8F1B4U0	DnaG family primase	NA
UHGV-0121692_22	Structural annotation	MF_04157, NF006382	NA	NA
UHGV-0121692_25	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0121692_25	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0121692_25	UniRef90	UniRef90_A0A348JCQ1	DNA ligase	NA
UHGV-0121692_25	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0121692_25	Structural annotation	PF01068, PF00164, MF_00407, NF005796, COG1793	NA	NA
UHGV-0121692_27	KOfam	K19797	gp1; T-even-induced deoxynucleotide kinase [EC:2.7.4.12]	NA
UHGV-0121692_27	PHROG	phrog_139	deoxynucleoside monophosphate kinase	other
UHGV-0121692_27	UniRef90	UniRef90_A0A654JCI3	Putative deoxynucleoside monophosphate kinase	NA
UHGV-0121692_27	eggNOG-mapper	1147094.H6X3J7_9CAUD	kinase activity	NA
UHGV-0121692_27	Pfam	PF21448	Deoxynucleotide monophosphate kinase	DNMK
UHGV-0121692_27	Structural annotation	PF21448, MF_01111, TIGR01223, COG0237	NA	NA
UHGV-0121692_28	UniRef90	UniRef90_A0A8F1B5N3	C4-type zinc finger protein	NA
UHGV-0121692_29	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0121692_29	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0121692_29	UniRef90	UniRef90_A0A646QQD1	Putative flavin-dependent thymidylate synthase	NA
UHGV-0121692_29	eggNOG-mapper	1236504.HMPREF2132_01775	thymidylate synthase (FAD) activity	NA
UHGV-0121692_29	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0121692_29	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0121692_29	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0121692_32	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0121692_32	UniRef90	UniRef90_A0A348JCQ5	Putative iphovirus Gp157 family protein GAM-like host nuclease inhibitor	NA
UHGV-0121692_32	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0121692_32	Structural annotation	PF05565	NA	NA
UHGV-0121692_34	PHROG	phrog_1221	NA	unknown function
UHGV-0121692_34	UniRef90	UniRef90_A0A348JCQ7	Putative phage/plasmid-related protein	NA
UHGV-0121692_34	eggNOG-mapper	468059.AUHA01000007_gene2709	TIGRFAM phage plasmid-related protein TIGR03299	NA
UHGV-0121692_34	Pfam	PF06067	NA	DUF932
UHGV-0121692_34	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0121692_34	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0121692_35	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0121692_35	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0121692_35	UniRef90	UniRef90_A0A348JCQ8	Putative Dut dUTPase	NA
UHGV-0121692_35	eggNOG-mapper	1385521.N803_07205	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0121692_35	Pfam	PF00692	dUTPase	dUTPase
UHGV-0121692_35	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0121692_35	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0121692_36	PHROG	phrog_11651	NA	unknown function
UHGV-0121692_36	UniRef90	UniRef90_A0A7M1RPJ6	NA	NA
UHGV-0121692_36	Structural annotation	PF13973, MF_01194, COG4728	NA	NA
UHGV-0121692_37	UniRef90	UniRef90_A0A348JCR1	Putative truncated thioredoxin	NA
UHGV-0121692_37	Structural annotation	PF00085, MF_01835, TIGR00411, COG0526	NA	NA
UHGV-0121692_39	UniRef90	UniRef90_A0A8F1B556	Thioredoxin	NA
UHGV-0121692_39	Structural annotation	PF00085, TIGR00411, COG0526	NA	NA
UHGV-0121692_42	PHROG	phrog_9467	NA	unknown function
UHGV-0121692_42	UniRef90	UniRef90_A0A348JCR5	Putative phage protein of N4_gp49/Sf6_gp66 (Pfam13876) family	NA
UHGV-0121692_42	eggNOG-mapper	1122971.BAME01000039_gene3564	NA	NA
UHGV-0121692_42	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0121692_42	dbAPIS	APIS043	NA	NA
UHGV-0121692_42	Structural annotation	PF13876	NA	NA
UHGV-0121692_45	UniRef90	UniRef90_A0A348JCR6	Putative plasmid replication initiation protein RepL	NA
UHGV-0121692_45	Pfam	PF05732	Firmicute plasmid replication protein (RepL)	RepL
UHGV-0121692_45	Structural annotation	PF05732, TIGR01610	NA	NA
UHGV-0121692_46	UniRef90	UniRef90_A0A7D2C6K9	RNAP catalytic subunit/RNAP subunit fusion protein	NA
UHGV-0121692_47	UniRef90	UniRef90_A0A348JCR8	Putative RNAP associated protein fused to zincin protease	NA
UHGV-0121692_51	UniRef90	UniRef90_A0A8F0WB78	Putative phage stabilization protein (Pfam11134), P22_gp10	NA
UHGV-0121692_51	Structural annotation	PF11134, NF040673	NA	NA
UHGV-0121692_52	UniRef90	UniRef90_A0A348JCS3	Putative tail tubular protein P22_gp4	NA
UHGV-0121692_53	UniRef90	UniRef90_A0A348JCS4	Putative integration host factor IHF subunit histone-like protein	NA
UHGV-0121692_54	UniRef90	UniRef90_A0A348JCS5	Putative integration host factor IHF subunit histone-like protein	NA
UHGV-0121692_54	Structural annotation	PF20387	NA	NA
UHGV-0121692_56	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0121692_56	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0121692_56	UniRef90	UniRef90_A0A7D1Y294	Reverse transcriptase	NA
UHGV-0121692_56	eggNOG-mapper	1121100.JCM6294_1117	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0121692_56	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0121692_56	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0121692_56	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0121692_56	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0121692_57	PHROG	phrog_5302	tail protein	tail
UHGV-0121692_57	UniRef90	UniRef90_A0A348JCS7	NA	NA
UHGV-0121692_57	eggNOG-mapper	445970.ALIPUT_02628	NA	NA
UHGV-0121692_57	Structural annotation	TIGR03525, COG1262	NA	NA
UHGV-0121692_58	UniRef90	UniRef90_A0A654JCK1	Putative tail needle protein	NA
UHGV-0121692_59	PHROG	phrog_15610	protease	other
UHGV-0121692_59	UniRef90	UniRef90_A0A348JCW5	Putative zincin superfamily protease	NA
UHGV-0121692_59	eggNOG-mapper	1347393.HG726024_gene2889	NA	NA
UHGV-0121692_62	Structural annotation	PF19070	NA	NA
UHGV-0121692_63	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-0121692_64	UniRef90	UniRef90_A0A348JCT3	Putative tail protein	NA
UHGV-0121692_65	PHROG	phrog_24956	NA	unknown function
UHGV-0121692_65	UniRef90	UniRef90_A0A348JCT4	Putative tail protein	NA
UHGV-0121692_65	eggNOG-mapper	376686.Fjoh_2055	Participates in initiation and elongation during chromosome replication	NA
UHGV-0121692_65	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0121692_66	UniRef90	UniRef90_A0A348JCT5	Putative tail protein	NA
UHGV-0121692_66	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0121692_67	UniRef90	UniRef90_A0A7M1RTI4	Putative Bacon domain containing protein	NA
UHGV-0121692_67	eggNOG-mapper	357276.EL88_02450	Fimbrillin-like	NA
UHGV-0121692_67	Structural annotation	PF16319, NF033506	NA	NA
UHGV-0121692_68	UniRef90	UniRef90_A0A348JCT7	Putative tail protein	NA
UHGV-0121692_69	PHROG	phrog_38707	NA	unknown function
UHGV-0121692_69	UniRef90	UniRef90_A0A8F0WBC6	Putative tail fiber protein	NA
UHGV-0121692_69	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0121692_69	Pfam	PF08167	rRNA processing/ribosome biogenesis	RIX1
UHGV-0121692_70	UniRef90	UniRef90_A0A348JCT9	Putative tail protein	NA
UHGV-0121692_70	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-0121692_70	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0121692_71	UniRef90	UniRef90_A0A059P8Y8	Orf00078	NA
UHGV-0121692_73	UniRef90	UniRef90_A0A7M1RYC5	Putative pholin	NA
UHGV-0121692_74	UniRef90	UniRef90_A0A348JCU3	Putative tail sheath protein	NA
UHGV-0121692_74	Structural annotation	COG4386	NA	NA
UHGV-0121692_75	Structural annotation	PF20387	NA	NA
UHGV-0121692_77	PHROG	phrog_11589	major head protein	head and packaging
UHGV-0121692_77	UniRef90	UniRef90_A0A348JCU6	Putative major capsid protein	NA
UHGV-0121692_77	Structural annotation	PF17236, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0121692_79	PHROG	phrog_6547	portal protein	head and packaging
UHGV-0121692_79	UniRef90	UniRef90_A0A348JCU8	Putative portal protein	NA
UHGV-0121692_79	Structural annotation	PF16510, MF_04120, TIGR01542, COG5518	NA	NA
UHGV-0121692_80	PHROG	phrog_6681	terminase large subunit	head and packaging
UHGV-0121692_80	UniRef90	UniRef90_A0A348JCU9	Putative terminase large subunit	NA
UHGV-0121692_80	Structural annotation	PF03237, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0121692_83	PHROG	phrog_315	endolysin	lysis
UHGV-0121692_83	UniRef90	UniRef90_A0A8F0WBB8	Putative lyzozyme	NA
UHGV-0121692_83	eggNOG-mapper	1168289.AJKI01000040_gene3163	Predicted Peptidoglycan domain	NA
UHGV-0121692_83	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0121692_83	COG	COG3926	Lysozyme family protein	NA
UHGV-0121692_83	Structural annotation	PF05838, NF040573, COG3926	NA	NA
UHGV-0121692_85	UniRef90	UniRef90_A0A3E1NJF6	PG_binding_3 domain-containing protein	NA
UHGV-0121692_86	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121692_86	UniRef90	UniRef90_A0A348JCV3	Putative PD-(D/E)XK superfamily nuclease	NA
UHGV-0121692_86	Structural annotation	PF10926, MF_03030, TIGR00372, COG4343	NA	NA
UHGV-0121692_88	UniRef90	UniRef90_A0A8F1B5G8	Integration host factor IHF, DNA-binding protein HU	NA
UHGV-0121692_89	Structural annotation	NF001537	NA	NA
UHGV-0121692_91	UniRef90	UniRef90_A0A348JCV8	Putative plasmid replication initiation protein RepL	NA
UHGV-0121692_91	Pfam	PF05732	Firmicute plasmid replication protein (RepL)	RepL
UHGV-0121692_91	Structural annotation	PF05732, TIGR01610	NA	NA