UHGV-0121761

Genome information

Genome length 35,063 bps

CDS count 58

Completeness 56.45% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121761
vOTU ID	vOTU-032575
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_307656
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.34
Jumbo phage	No

Genome content
Genome length	35,063 bps
GC content	42.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	85.68%
Average CDS length	520.76 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121761_1	KOfam	K02477	K02477; two-component system, LytTR family, response regulator	NA
UHGV-0121761_1	UniRef90	UniRef90_UPI00189F24A6	LytTR family transcriptional regulator	NA
UHGV-0121761_1	eggNOG-mapper	435591.BDI_1033	LytTr DNA-binding domain	NA
UHGV-0121761_1	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0121761_1	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0121761_2	KOfam	K07678	barA, gacS, varS; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]	NA
UHGV-0121761_2	PHROG	phrog_10912	kinase	other
UHGV-0121761_2	UniRef90	UniRef90_K6AYZ5	Histidine kinase domain-containing protein	NA
UHGV-0121761_2	eggNOG-mapper	435591.BDI_1032	NA	NA
UHGV-0121761_2	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0121761_2	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0121761_2	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0121761_3	UniRef90	UniRef90_A0A1Q6FH58	HTH cro/C1-type domain-containing protein	NA
UHGV-0121761_3	eggNOG-mapper	272559.BF9343_2315	NA	NA
UHGV-0121761_4	eggNOG-mapper	1121098.HMPREF1534_01070	NA	NA
UHGV-0121761_4	Structural annotation	NF033787	NA	NA
UHGV-0121761_5	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121761_5	UniRef90	UniRef90_A0A496D212	HNH endonuclease	NA
UHGV-0121761_5	eggNOG-mapper	761193.Runsl_3984	HNH nucleases	NA
UHGV-0121761_5	PADLOC	HEase_00002	homing endonuclease	RM
UHGV-0121761_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0121761_5	Structural annotation	PF04545	NA	NA
UHGV-0121761_12	PHROG	phrog_4433	NA	unknown function
UHGV-0121761_12	eggNOG-mapper	1122985.HMPREF1991_02253	cell wall organization	NA
UHGV-0121761_12	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0121761_12	Structural annotation	NF007410	NA	NA
UHGV-0121761_13	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121761_13	UniRef90	UniRef90_A0A173VJD5	ERF superfamily	NA
UHGV-0121761_13	eggNOG-mapper	1408428.JNJP01000005_gene5	ERF superfamily	NA
UHGV-0121761_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0121761_13	Structural annotation	PF04404	NA	NA
UHGV-0121761_15	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0121761_15	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-0121761_16	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0121761_16	UniRef90	UniRef90_UPI00164A9C4B	NA	NA
UHGV-0121761_16	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0121761_16	Pfam	PF07105	NA	DUF1367
UHGV-0121761_16	Structural annotation	PF07105	NA	NA
UHGV-0121761_18	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121761_18	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-0121761_22	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0121761_22	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0121761_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121761_22	Structural annotation	PF01978, NF033788, COG1846	NA	NA
UHGV-0121761_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0121761_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0121761_23	UniRef90	UniRef90_A0A496CW25	Replicative DNA helicase	NA
UHGV-0121761_23	eggNOG-mapper	312153.Pnuc_0424	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0121761_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0121761_23	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0121761_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0121761_23	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0121761_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0121761_23	Structural annotation	PF03796, PF05203, PF00772, MF_04155, MF_01420, TIGR00665, COG0305	NA	NA
UHGV-0121761_25	KOfam	K02078	acpP; acyl carrier protein	NA
UHGV-0121761_25	PHROG	phrog_5934	acyl carrier protein	moron, auxiliary metabolic gene and host takeover
UHGV-0121761_25	UniRef90	UniRef90_A0A496CV39	Acyl carrier protein	NA
UHGV-0121761_25	eggNOG-mapper	324925.Ppha_0196	Carrier of the growing fatty acid chain in fatty acid biosynthesis	NA
UHGV-0121761_25	Pfam	PF00550	Phosphopantetheine attachment site	PP-binding
UHGV-0121761_25	NCBIFam	NF002148.0	acyl carrier protein	NA
UHGV-0121761_25	COG	COG0236	Acyl carrier protein	NA
UHGV-0121761_25	HAMAP	MF_01217	Acyl carrier protein [acpP]	NA
UHGV-0121761_25	Structural annotation	PF14573, MF_01217, NF002150, COG0236	NA	NA
UHGV-0121761_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0121761_27	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0121761_27	UniRef90	UniRef90_A0A496CUZ6	Methyltransferase	NA
UHGV-0121761_27	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0121761_27	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0121761_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0121761_27	COG	COG0863	DNA modification methylase	NA
UHGV-0121761_27	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0121761_31	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0121761_31	PHROG	phrog_3193	NA	unknown function
UHGV-0121761_31	UniRef90	UniRef90_A0A173VGZ5	ASCH domain	NA
UHGV-0121761_31	eggNOG-mapper	1347393.HG726021_gene398	ASCH domain	NA
UHGV-0121761_31	Pfam	PF04266	ASCH domain	ASCH
UHGV-0121761_31	Structural annotation	COG4933	NA	NA
UHGV-0121761_32	UniRef90	UniRef90_UPI001F2864BD	NA	NA
UHGV-0121761_32	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0121761_32	Pfam	PF04448	NA	DUF551
UHGV-0121761_36	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0121761_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0121761_36	UniRef90	UniRef90_UPI00189BCD49	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0121761_36	eggNOG-mapper	742817.HMPREF9449_01776	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0121761_36	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0121761_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0121761_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0121761_36	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0121761_38	UniRef90	UniRef90_A0A496CRB8	Fructan hydrolase	NA
UHGV-0121761_38	eggNOG-mapper	483215.BACFIN_05621	NA	NA
UHGV-0121761_39	PHROG	phrog_32516	NA	unknown function
UHGV-0121761_39	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0121761_39	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0121761_44	PHROG	phrog_156	portal protein	head and packaging
UHGV-0121761_44	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-0121761_44	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0121761_48	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-0121761_49	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0121761_51	UniRef90	UniRef90_UPI000481D884	NA	NA
UHGV-0121761_52	PHROG	phrog_3364	NA	unknown function
UHGV-0121761_52	UniRef90	UniRef90_A0A3R6D3K2	ATP-binding protein	NA
UHGV-0121761_52	eggNOG-mapper	1538644.KO02_22420	NA	NA
UHGV-0121761_52	Structural annotation	PF02518, MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0121761_53	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0121761_54	PHROG	phrog_26448	NA	unknown function
UHGV-0121761_54	eggNOG-mapper	411477.PARMER_02011	NA	NA
UHGV-0121761_54	Pfam	PF20647	NA	DUF6808
UHGV-0121761_54	Structural annotation	PF20647	NA	NA
UHGV-0121761_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0121761_55	PHROG	phrog_822	amidase	lysis
UHGV-0121761_55	UniRef90	UniRef90_A0A173VI77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121761_55	eggNOG-mapper	1235803.C825_00174	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0121761_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0121761_55	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0121761_55	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0121761_56	PHROG	phrog_15037	NA	unknown function
UHGV-0121761_56	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0121761_56	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0121761_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0121761_58	KOfam	K13730	inlA; internalin A	NA
UHGV-0121761_58	Structural annotation	NF033190, COG4886	NA	NA