UHGV-0121762

Genome information

Genome length 39,989 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121762
vOTU ID	vOTU-045849
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_307667
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.11
Jumbo phage	No

Genome content
Genome length	39,989 bps
GC content	39.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.92%
Average CDS length	621.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121762_1	Structural annotation	PF09943	NA	NA
UHGV-0121762_2	PHROG	phrog_674	NA	unknown function
UHGV-0121762_2	UniRef90	UniRef90_A0A416D4U8	NA	NA
UHGV-0121762_2	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0121762_2	Pfam	PF07083	NA	DUF1351
UHGV-0121762_2	Structural annotation	PF07083	NA	NA
UHGV-0121762_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0121762_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121762_3	UniRef90	UniRef90_UPI001D034282	recombinase RecT	NA
UHGV-0121762_3	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0121762_3	Pfam	PF03837	RecT family	RecT
UHGV-0121762_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0121762_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0121762_3	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0121762_4	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0121762_4	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0121762_4	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-0121762_4	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0121762_4	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0121762_4	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0121762_4	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0121762_5	PHROG	phrog_398	NA	unknown function
UHGV-0121762_5	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0121762_5	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0121762_5	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0121762_5	Structural annotation	PF16784	NA	NA
UHGV-0121762_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121762_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121762_7	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-0121762_7	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0121762_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121762_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121762_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121762_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121762_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0121762_8	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0121762_8	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0121762_8	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-0121762_8	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0121762_8	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0121762_8	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0121762_8	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0121762_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121762_8	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0121762_9	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121762_9	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0121762_9	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0121762_11	PHROG	phrog_3878	NA	unknown function
UHGV-0121762_11	eggNOG-mapper	1118055.CAGU01000029_gene22	NA	NA
UHGV-0121762_12	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0121762_12	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-0121762_12	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0121762_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0121762_12	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0121762_12	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0121762_12	Structural annotation	NF007260	NA	NA
UHGV-0121762_14	PHROG	phrog_6802	NA	unknown function
UHGV-0121762_14	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0121762_15	eggNOG-mapper	1235793.C809_02213	NA	NA
UHGV-0121762_15	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0121762_17	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0121762_17	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0121762_17	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0121762_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121762_20	UniRef90	UniRef90_A0A174ZYK6	Phage transcriptional regulator, RinA family	NA
UHGV-0121762_20	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0121762_20	Structural annotation	PF02996	NA	NA
UHGV-0121762_21	PHROG	phrog_21498	NA	unknown function
UHGV-0121762_21	UniRef90	UniRef90_A0A250ETS9	Chromosome partitioning protein ParB	NA
UHGV-0121762_21	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0121762_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0121762_21	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0121762_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0121762_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0121762_22	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0121762_22	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0121762_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0121762_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0121762_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0121762_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121762_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0121762_23	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0121762_23	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0121762_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0121762_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0121762_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0121762_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121762_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0121762_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0121762_24	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0121762_24	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0121762_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0121762_24	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0121762_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0121762_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0121762_25	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0121762_25	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0121762_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0121762_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0121762_25	COG	COG2369	NA	NA
UHGV-0121762_25	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0121762_27	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0121762_27	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0121762_27	Pfam	PF14265	NA	DUF4355
UHGV-0121762_27	Structural annotation	PF14265	NA	NA
UHGV-0121762_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0121762_28	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0121762_28	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0121762_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0121762_28	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0121762_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0121762_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0121762_28	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0121762_29	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0121762_29	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0121762_29	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0121762_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0121762_29	Structural annotation	PF05135	NA	NA
UHGV-0121762_30	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0121762_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0121762_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0121762_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0121762_31	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0121762_31	eggNOG-mapper	1118063.I7ILS4_9CAUD	exonuclease activity	NA
UHGV-0121762_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0121762_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0121762_31	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0121762_32	PHROG	phrog_78	tail terminator	connector
UHGV-0121762_32	Structural annotation	PF05657	NA	NA
UHGV-0121762_33	PHROG	phrog_88	major tail protein	tail
UHGV-0121762_33	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0121762_33	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-0121762_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0121762_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0121762_35	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0121762_35	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0121762_35	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0121762_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0121762_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0121762_35	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0121762_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0121762_36	UniRef90	UniRef90_R6MKV6	Phage-related protein	NA
UHGV-0121762_36	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0121762_36	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0121762_37	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0121762_37	UniRef90	UniRef90_R6MQW9	Phage minor structural protein	NA
UHGV-0121762_37	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-0121762_37	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0121762_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0121762_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0121762_37	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0121762_37	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0121762_38	UniRef90	UniRef90_A0A316P9E8	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-0121762_38	eggNOG-mapper	1408422.JHYF01000017_gene1892	NA	NA
UHGV-0121762_38	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0121762_40	KOfam	K07218	nosD; nitrous oxidase accessory protein	NA
UHGV-0121762_40	eggNOG-mapper	1120998.AUFC01000016_gene5	alginic acid biosynthetic process	NA
UHGV-0121762_40	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0121762_40	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0121762_40	COG	COG1511	NA	NA
UHGV-0121762_40	Structural annotation	TIGR03808	NA	NA
UHGV-0121762_42	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0121762_42	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0121762_43	PHROG	phrog_937	hemolysin	other
UHGV-0121762_43	eggNOG-mapper	693746.OBV_19000	NA	NA
UHGV-0121762_44	PHROG	phrog_443	holin	lysis
UHGV-0121762_44	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0121762_44	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0121762_44	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0121762_44	Structural annotation	PF16945	NA	NA
UHGV-0121762_45	PHROG	phrog_774	NA	unknown function
UHGV-0121762_45	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0121762_46	PHROG	phrog_918	NA	unknown function
UHGV-0121762_46	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-0121762_46	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0121762_46	Pfam	PF19791	NA	DUF6275
UHGV-0121762_46	Structural annotation	PF19791	NA	NA
UHGV-0121762_47	PHROG	phrog_9589	endolysin	lysis
UHGV-0121762_47	UniRef90	UniRef90_R6MJZ4	Peptidase C51 domain-containing protein	NA
UHGV-0121762_47	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0121762_47	Pfam	PF05257	CHAP domain	CHAP
UHGV-0121762_47	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0121762_47	Structural annotation	PF00877, TIGR02594	NA	NA
UHGV-0121762_48	KOfam	K14059	int; integrase	NA
UHGV-0121762_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0121762_48	UniRef90	UniRef90_A0A1C6FW60	Tyrosine recombinase XerD	NA
UHGV-0121762_48	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0121762_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0121762_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121762_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121762_48	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0121762_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0121762_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0121762_49	UniRef90	UniRef90_UPI0013795F20	helix-turn-helix domain-containing protein	NA
UHGV-0121762_49	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0121762_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0121762_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0121762_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0121762_49	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0121762_50	UniRef90	UniRef90_UPI001C1045C3	helix-turn-helix domain-containing protein	NA
UHGV-0121762_50	eggNOG-mapper	1033737.CAEV01000029_gene313	Helix-turn-helix	NA
UHGV-0121762_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0121762_50	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0121762_52	Structural annotation	PF11614, NF006325, COG2847	NA	NA
UHGV-0121762_54	PHROG	phrog_3240	NA	unknown function
UHGV-0121762_55	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0121762_55	UniRef90	UniRef90_UPI00148CD1FB	aspartate ammonia-lyase	NA
UHGV-0121762_55	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0121762_55	Pfam	PF11195	NA	DUF2829
UHGV-0121762_55	Structural annotation	PF11195	NA	NA
UHGV-0121762_56	UniRef90	UniRef90_A0A1C6FWP6	Helix-turn-helix domain	NA
UHGV-0121762_56	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0121762_56	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0121762_56	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0121762_60	Structural annotation	PF10922	NA	NA
UHGV-0121762_61	Structural annotation	PF17574	NA	NA