UHGV-0121861

Genome information

Genome length 38,622 bps

CDS count 76

Completeness 99.90% (high-quality)

geNomad score 0.9705

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121861
vOTU ID	vOTU-011735
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_338975
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9705
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.89
Jumbo phage	No

Genome content
Genome length	38,622 bps
GC content	27.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	91.95%
Average CDS length	471.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121861_1	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0121861_3	PHROG	phrog_1281	NA	unknown function
UHGV-0121861_3	UniRef90	UniRef90_UPI001D14EC7B	NA	NA
UHGV-0121861_3	eggNOG-mapper	525378.HMPREF0793_0191	NA	NA
UHGV-0121861_3	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0121861_3	COG	COG3600	NA	NA
UHGV-0121861_3	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0121861_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0121861_4	PHROG	phrog_1493	endolysin	lysis
UHGV-0121861_4	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-0121861_4	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0121861_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0121861_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0121861_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0121861_4	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0121861_5	PHROG	phrog_199	holin	lysis
UHGV-0121861_5	UniRef90	UniRef90_UPI00085C2E64	phage holin family protein	NA
UHGV-0121861_5	eggNOG-mapper	411902.CLOBOL_03863	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0121861_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0121861_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0121861_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0121861_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0121861_7	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0121861_7	UniRef90	UniRef90_UPI00177BDE11	tail fiber domain-containing protein	NA
UHGV-0121861_7	eggNOG-mapper	573061.Clocel_0796	Phage minor structural protein	NA
UHGV-0121861_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0121861_7	COG	COG4926	Phage-related protein	NA
UHGV-0121861_8	PHROG	phrog_6616	tail protein	tail
UHGV-0121861_8	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0121861_8	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0121861_8	COG	COG4926	Phage-related protein	NA
UHGV-0121861_8	Structural annotation	PF16466, TIGR03361, COG3500	NA	NA
UHGV-0121861_9	PHROG	phrog_1194	NA	unknown function
UHGV-0121861_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0121861_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0121861_10	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0121861_10	COG	COG1511	NA	NA
UHGV-0121861_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0121861_11	eggNOG-mapper	691966.D4P728_9CAUD	peptidoglycan catabolic process	NA
UHGV-0121861_12	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0121861_12	Structural annotation	PF10552	NA	NA
UHGV-0121861_13	PHROG	phrog_15609	NA	unknown function
UHGV-0121861_13	UniRef90	UniRef90_UPI000CF907AA	NA	NA
UHGV-0121861_13	eggNOG-mapper	1262449.CP6013_1921	NA	NA
UHGV-0121861_13	Pfam	PF11300	NA	DUF3102
UHGV-0121861_13	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0121861_13	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0121861_17	UniRef90	UniRef90_UPI0011CC2FB9	ribbon-helix-helix protein, CopG family	NA
UHGV-0121861_17	eggNOG-mapper	445971.ANASTE_01016	NA	NA
UHGV-0121861_18	PHROG	phrog_34504	NA	unknown function
UHGV-0121861_18	eggNOG-mapper	877415.JNJQ01000036_gene514	NA	NA
UHGV-0121861_19	eggNOG-mapper	1121087.AUCK01000002_gene2413	NA	NA
UHGV-0121861_21	Structural annotation	PF12363	NA	NA
UHGV-0121861_22	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0121861_23	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0121861_23	Structural annotation	PF05657	NA	NA
UHGV-0121861_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0121861_27	eggNOG-mapper	445972.ANACOL_01847	NA	NA
UHGV-0121861_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0121861_28	UniRef90	UniRef90_R6HF87	HeH domain-containing protein	NA
UHGV-0121861_28	eggNOG-mapper	1217703.F904_00188	NA	NA
UHGV-0121861_28	Pfam	PF12949	HeH/LEM domain	HeH
UHGV-0121861_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0121861_29	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0121861_29	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0121861_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0121861_30	UniRef90	UniRef90_R6HDW5	Phage scaffold protein	NA
UHGV-0121861_30	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0121861_30	Pfam	PF14265	NA	DUF4355
UHGV-0121861_30	Structural annotation	PF14265	NA	NA
UHGV-0121861_33	UniRef90	UniRef90_A0A6M0SIM4	Phage_Mu_F domain-containing protein	NA
UHGV-0121861_33	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0121861_33	COG	COG2369	NA	NA
UHGV-0121861_34	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0121861_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0121861_35	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0121861_35	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0121861_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0121861_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0121861_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121861_36	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0121861_36	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0121861_36	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0121861_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0121861_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121861_36	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0121861_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121861_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0121861_37	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-0121861_37	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0121861_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0121861_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121861_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0121861_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0121861_38	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0121861_38	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0121861_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0121861_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0121861_38	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0121861_40	PHROG	phrog_1233	NA	unknown function
UHGV-0121861_40	Structural annotation	PF13058	NA	NA
UHGV-0121861_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0121861_43	Pfam	PF07374	NA	DUF1492
UHGV-0121861_43	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0121861_45	PHROG	phrog_548	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0121861_45	UniRef90	UniRef90_A0A2Z4PZ07	Putative RNA ligase	NA
UHGV-0121861_45	eggNOG-mapper	221915.Q6Y7U5_BPPGK	RNA ligase	NA
UHGV-0121861_45	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-0121861_45	Structural annotation	PF09414, MF_04150, TIGR02306, COG1423	NA	NA
UHGV-0121861_49	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0121861_54	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0121861_54	UniRef90	UniRef90_A0A7T9QAV3	NA	NA
UHGV-0121861_54	eggNOG-mapper	935836.JAEL01000021_gene1512	NA	NA
UHGV-0121861_54	Pfam	PF06356	NA	DUF1064
UHGV-0121861_54	Structural annotation	PF06356	NA	NA
UHGV-0121861_55	Structural annotation	PF15188	NA	NA
UHGV-0121861_58	PHROG	phrog_1123	NA	unknown function
UHGV-0121861_58	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-0121861_58	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0121861_59	PHROG	phrog_9804	NA	unknown function
UHGV-0121861_59	UniRef90	UniRef90_UPI00058D49CF	replicative helicase loader/inhibitor	NA
UHGV-0121861_59	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0121861_59	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0121861_59	Structural annotation	PF11417	NA	NA
UHGV-0121861_60	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0121861_60	UniRef90	UniRef90_A0A7C1ZJ22	Phg_2220_C domain-containing protein	NA
UHGV-0121861_60	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0121861_60	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-0121861_61	PHROG	phrog_7566	NA	unknown function
UHGV-0121861_61	eggNOG-mapper	1235792.C808_03078	NA	NA
UHGV-0121861_62	PHROG	phrog_1389	NA	unknown function
UHGV-0121861_62	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0121861_62	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0121861_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121861_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121861_63	UniRef90	UniRef90_R5Z2P9	Single-stranded DNA-binding protein	NA
UHGV-0121861_63	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0121861_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121861_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121861_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121861_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0121861_63	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0121861_64	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121861_64	UniRef90	UniRef90_A0A7X7HFU7	AAA family ATPase	NA
UHGV-0121861_64	eggNOG-mapper	1329516.JPST01000033_gene2854	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0121861_64	Pfam	PF13479	AAA domain	AAA_24
UHGV-0121861_64	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0121861_64	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0121861_71	eggNOG-mapper	1444310.JANV01000162_gene1224	Helix-turn-helix domain	NA
UHGV-0121861_71	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0121861_71	Structural annotation	PF07471, NF033787	NA	NA
UHGV-0121861_72	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0121861_72	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0121861_72	UniRef90	UniRef90_A0A6B3ZYL6	Phage antirepressor Ant	NA
UHGV-0121861_72	eggNOG-mapper	1499683.CCFF01000017_gene2614	Phage antirepressor protein	NA
UHGV-0121861_72	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0121861_72	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0121861_72	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0121861_72	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0121861_73	UniRef90	UniRef90_R5ZN14	HTH_8 domain-containing protein	NA
UHGV-0121861_73	eggNOG-mapper	1294142.CINTURNW_1656	NA	NA
UHGV-0121861_73	Structural annotation	PF05339, NF007271, COG3655	NA	NA
UHGV-0121861_74	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0121861_74	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0121861_74	eggNOG-mapper	431943.CKL_1914	TRANSCRIPTIONal	NA
UHGV-0121861_74	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0121861_75	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0121861_75	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0121861_75	UniRef90	UniRef90_A0A380FJ70	Phage repressor	NA
UHGV-0121861_75	eggNOG-mapper	1194526.A284_08095	Peptidase S24-like	NA
UHGV-0121861_75	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0121861_75	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0121861_76	KOfam	K14059	int; integrase	NA
UHGV-0121861_76	PHROG	phrog_1	integrase	integration and excision
UHGV-0121861_76	UniRef90	UniRef90_A0A3D4T5B0	Tyr recombinase domain-containing protein	NA
UHGV-0121861_76	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0121861_76	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0121861_76	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121861_76	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121861_76	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA