UHGV-0121865

Genome information

Genome length 30,864 bps

CDS count 42

Completeness 74.57% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121865
vOTU ID	vOTU-018376
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324654
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.6
Jumbo phage	No

Genome content
Genome length	30,864 bps
GC content	49.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	86.52%
Average CDS length	641.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121865_1	UniRef90	UniRef90_A0A376UFG8	Integrase	NA
UHGV-0121865_1	eggNOG-mapper	1524467.IV04_21705	Belongs to the 'phage' integrase family	NA
UHGV-0121865_1	Pfam	PF12167	Arm DNA-binding domain	Arm-DNA-bind_2
UHGV-0121865_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121865_2	PHROG	phrog_2917	excisionase	integration and excision
UHGV-0121865_2	UniRef90	UniRef90_I6PBM8	Putative excisionase	NA
UHGV-0121865_2	eggNOG-mapper	1524467.IV04_21700	NA	NA
UHGV-0121865_2	Structural annotation	PF10743, TIGR01764, COG3311	NA	NA
UHGV-0121865_3	PHROG	phrog_36586	NA	unknown function
UHGV-0121865_5	PHROG	phrog_1886	NA	unknown function
UHGV-0121865_5	eggNOG-mapper	716541.ECL_02716	NA	NA
UHGV-0121865_6	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121865_6	UniRef90	UniRef90_A0A8B3UZQ1	AP2 domain	NA
UHGV-0121865_6	eggNOG-mapper	1005994.GTGU_00310	HNH endonuclease	NA
UHGV-0121865_6	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0121865_6	Structural annotation	PF10729, NF007510	NA	NA
UHGV-0121865_7	PHROG	phrog_1737	NA	unknown function
UHGV-0121865_7	eggNOG-mapper	716541.ECL_02715	NA	NA
UHGV-0121865_7	Structural annotation	PF17345	NA	NA
UHGV-0121865_8	PHROG	phrog_8959	NA	unknown function
UHGV-0121865_8	Structural annotation	TIGR01280	NA	NA
UHGV-0121865_9	PHROG	phrog_6201	NA	unknown function
UHGV-0121865_9	UniRef90	UniRef90_F5RYZ5	S24 family peptidase	NA
UHGV-0121865_9	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0121865_9	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0121865_9	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0121865_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0121865_10	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0121865_10	UniRef90	UniRef90_A0A837F7Q1	HTH cro/C1-type domain-containing protein	NA
UHGV-0121865_10	eggNOG-mapper	1423734.JCM14202_2731	Helix-turn-helix XRE-family like proteins	NA
UHGV-0121865_10	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0121865_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0121865_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0121865_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0121865_11	UniRef90	UniRef90_A0A837F7E9	Regulatory protein	NA
UHGV-0121865_11	eggNOG-mapper	906669.G8C7U1_9CAUD	sequence-specific DNA binding	NA
UHGV-0121865_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121865_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0121865_11	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0121865_12	PHROG	phrog_1343	NA	unknown function
UHGV-0121865_12	UniRef90	UniRef90_UPI001F2A3AC7	NA	NA
UHGV-0121865_12	eggNOG-mapper	932213.SPM24T3_09701	NA	NA
UHGV-0121865_12	Pfam	PF13973	NA	DUF4222
UHGV-0121865_12	Structural annotation	PF13973, MF_00667	NA	NA
UHGV-0121865_13	PHROG	phrog_25210	NA	unknown function
UHGV-0121865_13	UniRef90	UniRef90_A0A764W9P3	DNA-binding protein	NA
UHGV-0121865_13	eggNOG-mapper	155864.EDL933_1254	Protein conserved in bacteria	NA
UHGV-0121865_13	COG	COG3756	NA	NA
UHGV-0121865_15	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0121865_15	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0121865_15	UniRef90	UniRef90_R4YHI6	SF4 helicase domain-containing protein	NA
UHGV-0121865_15	eggNOG-mapper	1397284.AYMN01000067_gene2197	Toprim-like	NA
UHGV-0121865_15	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0121865_15	Pfam	PF13481	AAA domain	AAA_25
UHGV-0121865_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0121865_15	Structural annotation	PF03796, PF01807, PF12965, MF_04154, NF040583, COG0305	NA	NA
UHGV-0121865_16	PHROG	phrog_33270	NA	unknown function
UHGV-0121865_17	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0121865_17	UniRef90	UniRef90_A0A7Z8FK12	Antitermination protein	NA
UHGV-0121865_17	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0121865_17	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0121865_17	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0121865_17	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0121865_17	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0121865_18	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121865_18	UniRef90	UniRef90_UPI0006667998	HNH endonuclease	NA
UHGV-0121865_18	eggNOG-mapper	1525715.IX54_11130	PFAM Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0121865_18	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0121865_18	Structural annotation	PF13392, PF00847	NA	NA
UHGV-0121865_19	PHROG	phrog_198	holin	lysis
UHGV-0121865_19	UniRef90	UniRef90_UPI000649E73C	phage holin family protein	NA
UHGV-0121865_19	eggNOG-mapper	716541.ECL_01677	Putative phage holin	NA
UHGV-0121865_19	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0121865_19	Structural annotation	PF16931	NA	NA
UHGV-0121865_20	PHROG	phrog_217	holin	lysis
UHGV-0121865_20	UniRef90	UniRef90_A0A263VXQ8	Phage holin family protein	NA
UHGV-0121865_20	eggNOG-mapper	906669.G8C7V9_9CAUD	Pfam:Phage_holin_3_7	NA
UHGV-0121865_20	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0121865_21	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0121865_21	PHROG	phrog_181	endolysin	lysis
UHGV-0121865_21	UniRef90	UniRef90_G8C7W0	Endochitinase	NA
UHGV-0121865_21	eggNOG-mapper	906669.G8C7W0_9CAUD	chitin catabolic process	NA
UHGV-0121865_21	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0121865_21	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0121865_22	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0121865_22	UniRef90	UniRef90_UPI001C5AC0A9	NA	NA
UHGV-0121865_22	eggNOG-mapper	906669.G8C7W1_9CAUD	NA	NA
UHGV-0121865_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0121865_23	UniRef90	UniRef90_A0A7W2WM39	HTH psq-type domain-containing protein	NA
UHGV-0121865_23	eggNOG-mapper	755731.Clo1100_2169	NA	NA
UHGV-0121865_24	PHROG	phrog_1275	Rz-like spanin	lysis
UHGV-0121865_24	eggNOG-mapper	1399774.JDWH01000016_gene3438	NA	NA
UHGV-0121865_25	PHROG	phrog_717	NA	unknown function
UHGV-0121865_25	eggNOG-mapper	716541.ECL_03206	NA	NA
UHGV-0121865_25	dbAPIS	APIS002	Vs.4 antagonized cGAS signaling by binding tightly to cGAMP (dissociation constant of approximately 30 nM) and sequestering it; Bioinformatic analyses identified 198 homologues of Vs.4 in diverse phages; belongs to PHROG 717.	NA
UHGV-0121865_26	PHROG	phrog_260	Bor-like outer membrane protein	other
UHGV-0121865_26	UniRef90	UniRef90_UPI00141977BD	Bor family protein	NA
UHGV-0121865_26	eggNOG-mapper	571.MC52_21200	Bor protein	NA
UHGV-0121865_26	Pfam	PF06291	Bor protein	Lambda_Bor
UHGV-0121865_26	Structural annotation	PF06291	NA	NA
UHGV-0121865_27	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0121865_27	UniRef90	UniRef90_A0A8B6A0D1	Glycosyltransferase family 2 protein	NA
UHGV-0121865_27	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-0121865_27	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-0121865_27	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-0121865_28	PHROG	phrog_11851	NA	unknown function
UHGV-0121865_29	PHROG	phrog_21164	NA	unknown function
UHGV-0121865_30	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0121865_30	eggNOG-mapper	1399774.JDWH01000046_gene1349	Glycosyl transferase, family 2	NA
UHGV-0121865_30	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0121865_30	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-0121865_31	PHROG	phrog_17731	NA	unknown function
UHGV-0121865_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0121865_32	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-0121865_32	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0121865_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0121865_32	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0121865_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0121865_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0121865_33	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-0121865_33	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-0121865_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0121865_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0121865_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0121865_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0121865_34	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-0121865_34	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-0121865_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0121865_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0121865_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0121865_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0121865_35	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0121865_35	UniRef90	UniRef90_A0A133LP05	Phage major capsid protein, HK97 family	NA
UHGV-0121865_35	eggNOG-mapper	1399774.JDWH01000035_gene2224	capsid protein	NA
UHGV-0121865_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0121865_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0121865_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0121865_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0121865_36	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0121865_36	UniRef90	UniRef90_UPI00163A2F5C	NA	NA
UHGV-0121865_36	eggNOG-mapper	1399774.JDWH01000035_gene2234	Putative phage tail protein	NA
UHGV-0121865_36	Pfam	PF09327	NA	DUF1983
UHGV-0121865_36	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0121865_37	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0121865_37	UniRef90	UniRef90_UPI000F82C090	NA	NA
UHGV-0121865_37	eggNOG-mapper	716541.ECL_01716	NA	NA
UHGV-0121865_37	Pfam	PF20051	NA	DUF6453
UHGV-0121865_37	Structural annotation	PF20051	NA	NA
UHGV-0121865_38	PHROG	phrog_17834	NA	unknown function
UHGV-0121865_38	UniRef90	UniRef90_A0A427KE37	Phage tail protein (Fragment)	NA
UHGV-0121865_38	eggNOG-mapper	1168549.I6R0Q9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0121865_39	PHROG	phrog_1591	tail fiber protein	tail
UHGV-0121865_39	UniRef90	UniRef90_UPI0012B9F9A9	phage tail protein	NA
UHGV-0121865_39	eggNOG-mapper	490103.B0FIH6_BPE32	outer membrane	NA
UHGV-0121865_40	PHROG	phrog_1591	tail fiber protein	tail
UHGV-0121865_40	UniRef90	UniRef90_UPI001ED9DC14	phage tail protein	NA
UHGV-0121865_40	eggNOG-mapper	1147158.K7PH95_9CAUD	peptidoglycan catabolic process	NA
UHGV-0121865_41	KOfam	K02406	fliC, hag; flagellin	NA
UHGV-0121865_41	PHROG	phrog_16088	NA	unknown function
UHGV-0121865_41	UniRef90	UniRef90_A2V706	Flagellin	NA
UHGV-0121865_41	eggNOG-mapper	517433.PanABDRAFT_3960	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	NA
UHGV-0121865_41	Pfam	PF00669	Bacterial flagellin N-terminal helical region	Flagellin_N
UHGV-0121865_41	Pfam	PF12445	Flagellin protein	FliC
UHGV-0121865_41	Pfam	PF00700	Bacterial flagellin C-terminal helical region	Flagellin_C
UHGV-0121865_41	NCBIFam	NF005953.0	FliC/FljB family flagellin	NA
UHGV-0121865_41	COG	COG1344	Flagellin and related hook-associated protein FlgL	NA
UHGV-0121865_42	KOfam	K07496	K07496; putative transposase	NA
UHGV-0121865_42	PHROG	phrog_506	transposase	integration and excision
UHGV-0121865_42	UniRef90	UniRef90_A0A366FEC9	Putative transposase	NA
UHGV-0121865_42	eggNOG-mapper	1111728.ATYS01000035_gene67	Transposase	NA
UHGV-0121865_42	PADLOC	V_U4	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0121865_42	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0121865_42	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0121865_42	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0121865_42	COG	COG0675	Transposase	NA
UHGV-0121865_42	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA