UHGV-0121870

Genome information

Genome length 29,557 bps

CDS count 39

Completeness 65.74% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121870
vOTU ID	vOTU-026440
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_324661
BioSample	SAMN00715157
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.37
Jumbo phage	No

Genome content
Genome length	29,557 bps
GC content	38.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.43%
Average CDS length	718.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121870_1	KOfam	K13059	nahK, lnpB; N-acetylhexosamine 1-kinase [EC:2.7.1.162]	NA
UHGV-0121870_1	UniRef90	UniRef90_A0A1C7GYC7	Aminoglycoside phosphotransferase	NA
UHGV-0121870_1	eggNOG-mapper	411476.BACOVA_05078	NA	NA
UHGV-0121870_1	Pfam	PF01636	Phosphotransferase enzyme family	APH
UHGV-0121870_1	COG	COG2334	Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist	NA
UHGV-0121870_2	UniRef90	UniRef90_A0A6H0KMW8	NA	NA
UHGV-0121870_2	eggNOG-mapper	411476.BACOVA_05077	COG NOG19149 non supervised orthologous group	NA
UHGV-0121870_2	Pfam	PF11644	NA	DUF3256
UHGV-0121870_3	eggNOG-mapper	1121101.HMPREF1532_02616	NA	NA
UHGV-0121870_4	UniRef90	UniRef90_UPI0013D41CEA	helix-turn-helix domain-containing protein	NA
UHGV-0121870_5	eggNOG-mapper	1227266.HMPREF1551_00515	NA	NA
UHGV-0121870_6	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0121870_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0121870_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0121870_9	UniRef90	UniRef90_UPI001EFF40C5	reverse transcriptase domain-containing protein	NA
UHGV-0121870_9	eggNOG-mapper	1538644.KO02_16315	reverse transcriptase	NA
UHGV-0121870_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0121870_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0121870_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0121870_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0121870_12	PHROG	phrog_28004	NA	unknown function
UHGV-0121870_12	eggNOG-mapper	411901.BACCAC_01118	NA	NA
UHGV-0121870_13	PHROG	phrog_873	endolysin	head and packaging
UHGV-0121870_13	UniRef90	UniRef90_A0A373G278	Structural protein P5	NA
UHGV-0121870_13	eggNOG-mapper	411479.BACUNI_00730	NA	NA
UHGV-0121870_14	UniRef90	UniRef90_UPI00189CD2F4	phage holin family protein	NA
UHGV-0121870_14	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0121870_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0121870_14	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0121870_15	UniRef90	UniRef90_J4VWV0	PF14301 domain protein	NA
UHGV-0121870_15	eggNOG-mapper	572544.Ilyop_1020	NA	NA
UHGV-0121870_16	PHROG	phrog_5717	tail protein	tail
UHGV-0121870_16	eggNOG-mapper	469616.FMAG_02522	NA	NA
UHGV-0121870_17	PHROG	phrog_24616	NA	unknown function
UHGV-0121870_17	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0121870_17	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0121870_17	Structural annotation	PF20459	NA	NA
UHGV-0121870_18	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0121870_18	eggNOG-mapper	357276.EL88_08355	NA	NA
UHGV-0121870_18	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0121870_19	PHROG	phrog_37138	NA	unknown function
UHGV-0121870_19	UniRef90	UniRef90_F3PDX4	Conserved domain protein	NA
UHGV-0121870_19	eggNOG-mapper	762984.HMPREF9445_00182	NA	NA
UHGV-0121870_20	PHROG	phrog_21217	NA	unknown function
UHGV-0121870_20	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-0121870_21	PHROG	phrog_38780	NA	unknown function
UHGV-0121870_21	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0121870_21	eggNOG-mapper	762984.HMPREF9445_00180	NA	NA
UHGV-0121870_21	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0121870_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0121870_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0121870_22	UniRef90	UniRef90_UPI001C37822A	Clp protease ClpP	NA
UHGV-0121870_22	eggNOG-mapper	357276.EL88_08375	Clp protease	NA
UHGV-0121870_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0121870_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0121870_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0121870_23	PHROG	phrog_17790	NA	unknown function
UHGV-0121870_23	UniRef90	UniRef90_A0A7W7AUU3	Aminopeptidase N	NA
UHGV-0121870_23	eggNOG-mapper	357276.EL88_08380	NA	NA
UHGV-0121870_24	PHROG	phrog_37298	NA	unknown function
UHGV-0121870_24	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0121870_24	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0121870_24	COG	COG1511	NA	NA
UHGV-0121870_24	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0121870_25	PHROG	phrog_33698	NA	unknown function
UHGV-0121870_25	eggNOG-mapper	483215.BACFIN_07520	NA	NA
UHGV-0121870_25	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0121870_26	PHROG	phrog_37065	NA	unknown function
UHGV-0121870_26	eggNOG-mapper	762984.HMPREF9445_00171	NA	NA
UHGV-0121870_26	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0121870_27	PHROG	phrog_31246	NA	unknown function
UHGV-0121870_27	UniRef90	UniRef90_F3PDW2	Conserved domain protein	NA
UHGV-0121870_27	eggNOG-mapper	762984.HMPREF9445_00170	NA	NA
UHGV-0121870_28	PHROG	phrog_33245	NA	unknown function
UHGV-0121870_28	UniRef90	UniRef90_F3PDW1	Conserved domain protein	NA
UHGV-0121870_28	eggNOG-mapper	357276.EL88_08405	NA	NA
UHGV-0121870_28	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0121870_29	PHROG	phrog_28240	NA	unknown function
UHGV-0121870_29	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0121870_29	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0121870_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0121870_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0121870_30	UniRef90	UniRef90_UPI000E572FA0	terminase large subunit	NA
UHGV-0121870_30	eggNOG-mapper	1121101.HMPREF1532_02597	Terminase RNAseH like domain	NA
UHGV-0121870_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0121870_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0121870_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0121870_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0121870_30	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0121870_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0121870_31	UniRef90	UniRef90_R6S335	Beta-galactoside alpha-2 3-sialyltransferase	NA
UHGV-0121870_31	eggNOG-mapper	1121101.HMPREF1532_02596	Helix-turn-helix of insertion element transposase	NA
UHGV-0121870_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0121870_31	Structural annotation	PF07141	NA	NA
UHGV-0121870_32	PHROG	phrog_874	NA	unknown function
UHGV-0121870_32	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0121870_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0121870_34	PHROG	phrog_12005	NA	unknown function
UHGV-0121870_36	PHROG	phrog_24427	NA	unknown function
UHGV-0121870_36	eggNOG-mapper	1141663.OOC_13729	NA	NA