UHGV-0121969

Genome information

Genome length 27,850 bps

CDS count 45

Completeness 51.02% (medium-quality)

geNomad score 0.9553

Prediction confidence Confident

Genome information
Genome ID	UHGV-0121969
vOTU ID	vOTU-022266
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_331910
BioSample	SAMN00715238
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9553
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - plasmid or chromosomal
viralVerify score	1.71
Jumbo phage	No

Genome content
Genome length	27,850 bps
GC content	44.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.68%
Average CDS length	583.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0121969_1	PHROG	phrog_27197	NA	unknown function
UHGV-0121969_1	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0121969_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0121969_2	PHROG	phrog_419	NA	unknown function
UHGV-0121969_2	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0121969_2	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0121969_2	Structural annotation	PF14083	NA	NA
UHGV-0121969_4	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0121969_4	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0121969_4	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0121969_4	Pfam	PF03837	RecT family	RecT
UHGV-0121969_4	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0121969_5	PHROG	phrog_25456	NA	unknown function
UHGV-0121969_6	KOfam	K06940	NA	NA
UHGV-0121969_6	PHROG	phrog_32498	NA	unknown function
UHGV-0121969_6	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0121969_6	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0121969_6	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0121969_7	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0121969_7	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0121969_7	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0121969_7	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0121969_7	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0121969_7	dbAPIS	APIS058	NA	NA
UHGV-0121969_7	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0121969_7	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0121969_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0121969_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0121969_9	UniRef90	UniRef90_A0A6N2U0F2	Single-stranded DNA-binding protein	NA
UHGV-0121969_9	eggNOG-mapper	357809.Cphy_3773	Single-stranded DNA-binding protein	NA
UHGV-0121969_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0121969_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0121969_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0121969_9	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0121969_12	PHROG	phrog_19106	NA	unknown function
UHGV-0121969_12	UniRef90	UniRef90_A0A417B0D0	GIY-YIG nuclease family protein	NA
UHGV-0121969_12	eggNOG-mapper	397290.C810_01509	NA	NA
UHGV-0121969_12	Structural annotation	TIGR01453	NA	NA
UHGV-0121969_13	PHROG	phrog_6724	NA	unknown function
UHGV-0121969_13	eggNOG-mapper	1463936.JOJI01000043_gene7935	NA	NA
UHGV-0121969_14	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0121969_14	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0121969_14	UniRef90	UniRef90_A0A843H1A9	DNA adenine methylase	NA
UHGV-0121969_14	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0121969_14	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0121969_14	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0121969_14	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0121969_15	PHROG	phrog_5781	NA	unknown function
UHGV-0121969_15	UniRef90	UniRef90_A0A4S2AEU6	NA	NA
UHGV-0121969_15	eggNOG-mapper	742767.HMPREF9456_03346	NA	NA
UHGV-0121969_15	Pfam	PF14359	NA	DUF4406
UHGV-0121969_15	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0121969_15	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0121969_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0121969_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0121969_16	UniRef90	UniRef90_UPI0018970F97	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0121969_16	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0121969_16	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-0121969_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0121969_16	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0121969_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0121969_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0121969_17	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-0121969_18	Structural annotation	NF007260	NA	NA
UHGV-0121969_19	eggNOG-mapper	246199.CUS_4371	NA	NA
UHGV-0121969_20	PHROG	phrog_874	NA	unknown function
UHGV-0121969_20	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0121969_20	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0121969_22	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0121969_22	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-0121969_22	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0121969_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0121969_22	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0121969_23	PHROG	phrog_9804	NA	unknown function
UHGV-0121969_23	UniRef90	UniRef90_A0A3A6JKE0	Inhibitor_G39P domain-containing protein	NA
UHGV-0121969_23	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0121969_23	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0121969_23	Structural annotation	PF11417	NA	NA
UHGV-0121969_24	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0121969_24	UniRef90	UniRef90_A0A413FWV3	NA	NA
UHGV-0121969_24	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0121969_24	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0121969_24	Structural annotation	PF18909	NA	NA
UHGV-0121969_25	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0121969_25	UniRef90	UniRef90_R6C2W3	DNA binding domain excisionase family	NA
UHGV-0121969_25	eggNOG-mapper	411467.BACCAP_04675	Excisionase from transposon Tn916	NA
UHGV-0121969_25	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0121969_25	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0121969_25	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0121969_25	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0121969_26	KOfam	K14059	int; integrase	NA
UHGV-0121969_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0121969_26	UniRef90	UniRef90_R7QYW6	Site-specific recombinase phage integrase family	NA
UHGV-0121969_26	eggNOG-mapper	411460.RUMTOR_01903	NA	NA
UHGV-0121969_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0121969_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121969_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121969_26	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0121969_27	KOfam	K00756	pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]	NA
UHGV-0121969_27	UniRef90	UniRef90_R5AKX3	Pyrimidine-nucleoside phosphorylase	NA
UHGV-0121969_27	eggNOG-mapper	97138.C820_01512	pyrimidine-nucleoside phosphorylase	NA
UHGV-0121969_27	Pfam	PF02885	Glycosyl transferase family, helical bundle domain	Glycos_trans_3N
UHGV-0121969_27	Pfam	PF00591	Glycosyl transferase family, a/b domain	Glycos_transf_3
UHGV-0121969_27	Pfam	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain	PYNP_C
UHGV-0121969_27	NCBIFam	TIGR02644.1	pyrimidine-nucleoside phosphorylase	NA
UHGV-0121969_27	COG	COG0213	Thymidine phosphorylase	NA
UHGV-0121969_28	KOfam	K01839	deoB; phosphopentomutase [EC:5.4.2.7]	NA
UHGV-0121969_28	UniRef90	UniRef90_R5A9S2	Phosphopentomutase	NA
UHGV-0121969_28	eggNOG-mapper	97138.C820_01510	Phosphotransfer between the C1 and C5 carbon atoms of pentose	NA
UHGV-0121969_28	Pfam	PF01676	Metalloenzyme superfamily	Metalloenzyme
UHGV-0121969_28	NCBIFam	NF003766.0	phosphopentomutase	NA
UHGV-0121969_28	COG	COG1015	Phosphopentomutase	NA
UHGV-0121969_28	HAMAP	MF_00740	Phosphopentomutase [deoB]	NA
UHGV-0121969_29	KOfam	K03823	pat, bar; phosphinothricin acetyltransferase [EC:2.3.1.183]	NA
UHGV-0121969_29	PHROG	phrog_1249	acetyltransferase	other
UHGV-0121969_29	UniRef90	UniRef90_R5ADM7	Phosphinothricin N-acetyltransferase	NA
UHGV-0121969_29	eggNOG-mapper	457421.CBFG_02181	Acetyltransferase (GNAT) domain	NA
UHGV-0121969_29	Pfam	PF13420	Acetyltransferase (GNAT) domain	Acetyltransf_4
UHGV-0121969_29	COG	COG1247	L-amino acid N-acyltransferase MnaT	NA
UHGV-0121969_30	eggNOG-mapper	97138.C820_01603	NA	NA
UHGV-0121969_30	Pfam	PF20548	NA	DUF6762
UHGV-0121969_32	KOfam	K14059	int; integrase	NA
UHGV-0121969_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0121969_32	UniRef90	UniRef90_A0A352UTV4	Site-specific integrase	NA
UHGV-0121969_32	eggNOG-mapper	498761.HM1_0056	Belongs to the 'phage' integrase family	NA
UHGV-0121969_32	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0121969_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0121969_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0121969_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0121969_32	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0121969_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0121969_33	UniRef90	UniRef90_A0A352UTV3	HTH cro/C1-type domain-containing protein	NA
UHGV-0121969_33	eggNOG-mapper	755731.Clo1100_2181	sequence-specific DNA binding	NA
UHGV-0121969_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0121969_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0121969_33	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0121969_34	UniRef90	UniRef90_A0A352UTV2	HTH cro/C1-type domain-containing protein	NA
UHGV-0121969_34	eggNOG-mapper	1410653.JHVC01000004_gene3225	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0121969_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0121969_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0121969_35	PHROG	phrog_989	NA	unknown function
UHGV-0121969_35	UniRef90	UniRef90_A0A352UTV1	Transcriptional regulator	NA
UHGV-0121969_35	eggNOG-mapper	411461.DORFOR_01962	NA	NA
UHGV-0121969_35	Structural annotation	PF20063	NA	NA
UHGV-0121969_36	KOfam	K04485	radA, sms; DNA repair protein RadA/Sms	NA
UHGV-0121969_36	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0121969_36	UniRef90	UniRef90_UPI001D089724	bifunctional DNA primase/polymerase	NA
UHGV-0121969_36	eggNOG-mapper	476272.RUMHYD_03614	NA	NA
UHGV-0121969_36	Pfam	PF13481	AAA domain	AAA_25
UHGV-0121969_36	COG	COG3598	RecA-family ATPase	NA
UHGV-0121969_40	UniRef90	UniRef90_UPI001966E99C	NA	NA
UHGV-0121969_40	eggNOG-mapper	1105031.HMPREF1141_0548	NA	NA
UHGV-0121969_40	Pfam	PF14265	NA	DUF4355
UHGV-0121969_41	PHROG	phrog_422	major head protein	head and packaging
UHGV-0121969_41	eggNOG-mapper	1105031.HMPREF1141_0547	NA	NA
UHGV-0121969_41	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0121969_42	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0121969_42	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0121969_42	UniRef90	UniRef90_A0A352UTU2	Sigma70_r4 domain-containing protein	NA
UHGV-0121969_42	eggNOG-mapper	1507.HMPREF0262_00300	Sigma-70, region 4	NA
UHGV-0121969_42	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0121969_42	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0121969_42	Structural annotation	PF04545, PF04542, MF_00961, TIGR02393, COG1191	NA	NA
UHGV-0121969_44	eggNOG-mapper	1304866.K413DRAFT_0791	NA	NA
UHGV-0121969_44	AcrCatalog	cluster_8902	NA	NA
UHGV-0121969_44	Structural annotation	PF10944	NA	NA
UHGV-0121969_45	KOfam	K03976	ybaK, ebsC; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]	NA
UHGV-0121969_45	PHROG	phrog_17858	NA	unknown function
UHGV-0121969_45	UniRef90	UniRef90_A0A352UTT9	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase	NA
UHGV-0121969_45	eggNOG-mapper	97138.C820_01601	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily	NA
UHGV-0121969_45	Pfam	PF04073	Aminoacyl-tRNA editing domain	tRNA_edit
UHGV-0121969_45	NCBIFam	TIGR00011.1	Cys-tRNA(Pro) deacylase	NA
UHGV-0121969_45	COG	COG2606	Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC	NA
UHGV-0121969_45	Structural annotation	PF04073, TIGR00011, COG2606	NA	NA