UHGV-0122042

Genome information

Genome length 35,196 bps

CDS count 56

Completeness 82.55% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122042
vOTU ID	vOTU-034000
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_320320
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.15
Jumbo phage	No

Genome content
Genome length	35,196 bps
GC content	42.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.88%
Average CDS length	575.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122042_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0122042_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0122042_1	UniRef90	UniRef90_A0A173S7T2	Resolvase, N terminal domain	NA
UHGV-0122042_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0122042_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0122042_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0122042_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0122042_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0122042_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0122042_2	PHROG	phrog_2695	NA	unknown function
UHGV-0122042_2	UniRef90	UniRef90_A0A1Y4RMA4	SIR2_2 domain-containing protein	NA
UHGV-0122042_2	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-0122042_2	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0122042_2	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0122042_2	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0122042_2	Structural annotation	PF13289	NA	NA
UHGV-0122042_3	eggNOG-mapper	1216932.CM240_0696	NA	NA
UHGV-0122042_3	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0122042_4	PHROG	phrog_87	metallo-protease	other
UHGV-0122042_4	UniRef90	UniRef90_A0A316M7A2	Peptidase_M78 domain-containing protein	NA
UHGV-0122042_4	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0122042_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0122042_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0122042_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0122042_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0122042_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122042_5	UniRef90	UniRef90_R9J0L9	HTH cro/C1-type domain-containing protein	NA
UHGV-0122042_5	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0122042_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0122042_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122042_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0122042_6	UniRef90	UniRef90_A0A416W0Y7	XRE family transcriptional regulator	NA
UHGV-0122042_6	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0122042_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0122042_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0122042_8	UniRef90	UniRef90_A0A373K1G5	XRE family transcriptional regulator	NA
UHGV-0122042_8	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0122042_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0122042_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0122042_10	PHROG	phrog_11939	NA	unknown function
UHGV-0122042_10	eggNOG-mapper	1004785.AMBLS11_01120	NA	NA
UHGV-0122042_10	Structural annotation	PF13031	NA	NA
UHGV-0122042_12	Structural annotation	PF12750	NA	NA
UHGV-0122042_15	PHROG	phrog_674	NA	unknown function
UHGV-0122042_15	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0122042_15	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0122042_15	Pfam	PF07083	NA	DUF1351
UHGV-0122042_15	Structural annotation	PF07083	NA	NA
UHGV-0122042_16	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122042_16	UniRef90	UniRef90_A0A173S979	ERF superfamily	NA
UHGV-0122042_16	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0122042_16	Pfam	PF04404	ERF superfamily	ERF
UHGV-0122042_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122042_16	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0122042_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0122042_17	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0122042_18	PHROG	phrog_7566	NA	unknown function
UHGV-0122042_18	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0122042_18	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0122042_19	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122042_19	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0122042_19	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0122042_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122042_20	UniRef90	UniRef90_A0A396KBA8	AP2 domain-containing protein	NA
UHGV-0122042_20	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0122042_20	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0122042_21	PHROG	phrog_16304	NA	unknown function
UHGV-0122042_21	UniRef90	UniRef90_UPI001F3474DD	NA	NA
UHGV-0122042_21	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0122042_21	Pfam	PF19808	NA	DUF6291
UHGV-0122042_21	Structural annotation	PF19808	NA	NA
UHGV-0122042_25	eggNOG-mapper	397288.C806_00101	NA	NA
UHGV-0122042_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0122042_26	UniRef90	UniRef90_A0A3R6R5U2	Restriction alleviation protein, Lar family	NA
UHGV-0122042_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0122042_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0122042_26	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0122042_28	PHROG	phrog_874	NA	unknown function
UHGV-0122042_28	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0122042_28	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0122042_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0122042_29	Structural annotation	PF11184	NA	NA
UHGV-0122042_30	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0122042_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0122042_31	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0122042_31	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0122042_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0122042_31	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0122042_32	PHROG	phrog_14088	NA	unknown function
UHGV-0122042_32	UniRef90	UniRef90_UPI000E4EAB4B	carboxypeptidase	NA
UHGV-0122042_32	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0122042_33	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0122042_33	UniRef90	UniRef90_UPI000E51D163	NA	NA
UHGV-0122042_33	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0122042_33	Pfam	PF13643	NA	DUF4145
UHGV-0122042_33	Structural annotation	PF13643	NA	NA
UHGV-0122042_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0122042_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0122042_35	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0122042_35	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0122042_35	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0122042_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0122042_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0122042_35	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0122042_37	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0122042_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122042_39	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-0122042_39	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0122042_39	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0122042_39	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0122042_41	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0122042_41	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0122042_41	UniRef90	UniRef90_A0A6L6XD66	Phage portal protein	NA
UHGV-0122042_41	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-0122042_41	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0122042_41	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0122042_41	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0122042_41	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0122042_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122042_42	PHROG	phrog_10250	NA	unknown function
UHGV-0122042_42	UniRef90	UniRef90_A0A173S6P4	Phage terminase, large subunit, PBSX family	NA
UHGV-0122042_42	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0122042_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0122042_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0122042_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0122042_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122042_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0122042_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0122042_43	UniRef90	UniRef90_A0A173S8B4	Phage portal protein, SPP1 family	NA
UHGV-0122042_43	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0122042_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0122042_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0122042_44	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0122042_44	UniRef90	UniRef90_A0A6L6L8D3	Phage_Mu_F domain-containing protein	NA
UHGV-0122042_44	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0122042_44	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0122042_44	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0122042_44	COG	COG2369	NA	NA
UHGV-0122042_44	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0122042_45	eggNOG-mapper	861454.HMPREF9099_02115	NA	NA
UHGV-0122042_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0122042_46	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0122042_46	eggNOG-mapper	411468.CLOSCI_00287	Phage minor structural protein GP20	NA
UHGV-0122042_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0122042_46	Structural annotation	PF06810	NA	NA
UHGV-0122042_47	PHROG	phrog_247	major head protein	head and packaging
UHGV-0122042_47	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-0122042_47	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0122042_47	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0122042_48	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0122042_48	UniRef90	UniRef90_A0A173S6L1	Phage gp6-like head-tail connector protein	NA
UHGV-0122042_48	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0122042_48	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0122042_48	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0122042_49	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0122042_49	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-0122042_49	eggNOG-mapper	608534.GCWU000341_02290	NA	NA
UHGV-0122042_49	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0122042_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0122042_50	UniRef90	UniRef90_A0A6L6L8L6	HK97 gp10 family phage protein	NA
UHGV-0122042_50	eggNOG-mapper	642492.Clole_2753	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0122042_50	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0122042_50	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0122042_51	PHROG	phrog_525	NA	unknown function
UHGV-0122042_51	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-0122042_51	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-0122042_51	Pfam	PF20765	NA	DUF6838
UHGV-0122042_51	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0122042_52	PHROG	phrog_966	NA	unknown function
UHGV-0122042_52	eggNOG-mapper	397288.C806_00127	NA	NA
UHGV-0122042_53	PHROG	phrog_279	tail sheath	tail
UHGV-0122042_53	UniRef90	UniRef90_A0A173S672	Phage tail sheath protein	NA
UHGV-0122042_53	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0122042_53	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0122042_53	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0122042_53	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0122042_53	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0122042_54	PHROG	phrog_365	tail protein	tail
UHGV-0122042_54	UniRef90	UniRef90_A0A173S7M6	Phage-like element PBSX protein xkdM	NA
UHGV-0122042_54	eggNOG-mapper	357809.Cphy_2957	Phage tail tube protein	NA
UHGV-0122042_54	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0122042_54	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0122042_55	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0122042_55	UniRef90	UniRef90_A0A173S656	Phage XkdN-like protein	NA
UHGV-0122042_55	eggNOG-mapper	1235790.C805_00601	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0122042_55	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0122042_55	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0122042_56	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0122042_56	UniRef90	UniRef90_A0A173S6B7	Phage-related minor tail protein	NA
UHGV-0122042_56	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0122042_56	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0122042_56	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0122042_56	COG	COG5281	Phage-related minor tail protein	NA