UHGV-0122134

Genome information

Genome length 37,917 bps

CDS count 61

Completeness 90.50% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122134
vOTU ID	vOTU-060704
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_312887
BioSample	SAMEA37086418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.88
Jumbo phage	No

Genome content
Genome length	37,917 bps
GC content	39.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.97%
Average CDS length	575.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122134_1	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0122134_1	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0122134_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0122134_2	PHROG	phrog_87	metallo-protease	other
UHGV-0122134_2	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0122134_2	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0122134_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0122134_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0122134_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0122134_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122134_3	UniRef90	UniRef90_A0A414RMQ9	XRE family transcriptional regulator	NA
UHGV-0122134_3	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0122134_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122134_3	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0122134_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0122134_4	UniRef90	UniRef90_A0A3R5WA69	DNA-binding protein	NA
UHGV-0122134_4	eggNOG-mapper	1449050.JNLE01000005_gene3960	Helix-turn-helix domain	NA
UHGV-0122134_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0122134_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0122134_4	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0122134_8	PHROG	phrog_6058	NA	unknown function
UHGV-0122134_9	Structural annotation	PF11127	NA	NA
UHGV-0122134_11	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0122134_13	PHROG	phrog_674	NA	unknown function
UHGV-0122134_13	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0122134_13	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0122134_13	Pfam	PF07083	NA	DUF1351
UHGV-0122134_13	Structural annotation	PF07083	NA	NA
UHGV-0122134_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122134_14	UniRef90	UniRef90_A0A412KFC1	Single-stranded DNA-binding protein	NA
UHGV-0122134_14	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0122134_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0122134_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0122134_14	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0122134_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0122134_15	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0122134_16	PHROG	phrog_7566	NA	unknown function
UHGV-0122134_16	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0122134_16	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0122134_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0122134_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122134_18	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0122134_18	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0122134_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0122134_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122134_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0122134_19	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0122134_19	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0122134_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0122134_19	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0122134_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0122134_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0122134_20	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0122134_20	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0122134_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0122134_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0122134_20	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0122134_25	Structural annotation	PF18597	NA	NA
UHGV-0122134_26	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0122134_27	PHROG	phrog_8684	NA	unknown function
UHGV-0122134_27	UniRef90	UniRef90_A0A352SFV6	YopX domain-containing protein	NA
UHGV-0122134_27	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0122134_27	Pfam	PF09643	YopX protein	YopX
UHGV-0122134_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0122134_29	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0122134_29	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0122134_29	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0122134_29	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0122134_29	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0122134_29	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0122134_30	PHROG	phrog_20593	NA	unknown function
UHGV-0122134_31	PHROG	phrog_874	NA	unknown function
UHGV-0122134_31	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0122134_31	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0122134_31	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0122134_32	PHROG	phrog_13489	NA	unknown function
UHGV-0122134_32	eggNOG-mapper	1158602.I590_00660	NA	NA
UHGV-0122134_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0122134_34	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0122134_34	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0122134_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0122134_34	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0122134_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0122134_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0122134_35	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0122134_35	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0122134_35	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0122134_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0122134_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0122134_35	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0122134_38	PHROG	phrog_23933	NA	unknown function
UHGV-0122134_38	UniRef90	UniRef90_R7JBB8	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	NA
UHGV-0122134_38	eggNOG-mapper	1415775.U729_2603	NA	NA
UHGV-0122134_38	Structural annotation	PF00211, NF033576, COG2114	NA	NA
UHGV-0122134_39	eggNOG-mapper	483218.BACPEC_01222	NA	NA
UHGV-0122134_40	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0122134_40	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0122134_40	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0122134_40	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0122134_40	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0122134_40	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0122134_40	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0122134_40	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0122134_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0122134_41	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0122134_41	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0122134_41	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0122134_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0122134_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0122134_41	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0122134_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0122134_42	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0122134_42	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0122134_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0122134_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0122134_43	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0122134_43	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0122134_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0122134_43	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0122134_43	COG	COG2369	NA	NA
UHGV-0122134_43	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0122134_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0122134_45	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0122134_45	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0122134_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0122134_45	Structural annotation	PF06810	NA	NA
UHGV-0122134_46	PHROG	phrog_212	major head protein	head and packaging
UHGV-0122134_46	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0122134_46	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0122134_46	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0122134_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0122134_48	PHROG	phrog_3366	NA	unknown function
UHGV-0122134_48	Pfam	PF20536	NA	DUF6751
UHGV-0122134_48	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0122134_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0122134_49	UniRef90	UniRef90_UPI0011061BF4	minor capsid protein	NA
UHGV-0122134_49	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-0122134_49	Structural annotation	PF11114	NA	NA
UHGV-0122134_50	PHROG	phrog_3266	tail completion	connector
UHGV-0122134_50	Structural annotation	PF12691	NA	NA
UHGV-0122134_51	PHROG	phrog_3099	NA	unknown function
UHGV-0122134_51	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0122134_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0122134_52	Structural annotation	PF20378	NA	NA
UHGV-0122134_53	PHROG	phrog_706	NA	unknown function
UHGV-0122134_53	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0122134_53	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0122134_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0122134_53	Structural annotation	PF06854	NA	NA
UHGV-0122134_54	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0122134_54	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0122134_54	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0122134_54	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0122134_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0122134_55	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0122134_55	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0122134_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-0122134_55	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0122134_56	PHROG	phrog_538	minor tail protein	tail
UHGV-0122134_56	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0122134_56	eggNOG-mapper	1121087.AUCK01000002_gene2497	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0122134_56	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0122134_56	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0122134_57	PHROG	phrog_1220	head protein	head and packaging
UHGV-0122134_57	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0122134_58	PHROG	phrog_1863	NA	unknown function
UHGV-0122134_58	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0122134_59	PHROG	phrog_443	holin	lysis
UHGV-0122134_59	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0122134_59	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0122134_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0122134_59	Structural annotation	PF16945	NA	NA
UHGV-0122134_60	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0122134_60	PHROG	phrog_7	endolysin	lysis
UHGV-0122134_60	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0122134_60	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0122134_60	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0122134_60	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0122134_60	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0122134_60	HAMAP	MF_04110	Endolysin	NA
UHGV-0122134_60	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0122134_61	KOfam	K19294	algI; alginate O-acetyltransferase complex protein AlgI	NA
UHGV-0122134_61	UniRef90	UniRef90_A0A174ESW8	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA
UHGV-0122134_61	eggNOG-mapper	622312.ROSEINA2194_02856	Membrane protein involved in D-alanine export	NA
UHGV-0122134_61	Pfam	PF03062	MBOAT, membrane-bound O-acyltransferase family	MBOAT
UHGV-0122134_61	COG	COG1696	D-alanyl-lipoteichoic acid acyltransferase DltB, MBOAT superfamily	NA