UHGV-0122143

Genome information

vOTU vOTU-020531

Genome length 45,533 bps

CDS count 65

Completeness 80.46% (medium-quality)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122143
vOTU ID	vOTU-020531
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_322722
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.59
Jumbo phage	No

Genome content
Genome length	45,533 bps
GC content	47.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	91.29%
Average CDS length	641.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122143_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0122143_3	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0122143_3	UniRef90	UniRef90_UPI0018AB7658	DNA cytosine methyltransferase	NA
UHGV-0122143_3	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0122143_3	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0122143_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0122143_3	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0122143_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0122143_3	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0122143_4	Structural annotation	PF16007, NF038251, COG1695	NA	NA
UHGV-0122143_5	Structural annotation	NF011227	NA	NA
UHGV-0122143_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0122143_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0122143_8	UniRef90	UniRef90_A0A316PKQ3	Replicative DNA helicase	NA
UHGV-0122143_8	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0122143_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0122143_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0122143_8	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0122143_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0122143_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0122143_9	PHROG	phrog_15768	NA	unknown function
UHGV-0122143_9	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0122143_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0122143_9	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0122143_10	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0122143_10	eggNOG-mapper	888059.HMPREF9071_2106	NA	NA
UHGV-0122143_11	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122143_11	UniRef90	UniRef90_A0A316PEM7	PDDEXK_1 domain-containing protein	NA
UHGV-0122143_11	eggNOG-mapper	313596.RB2501_01430	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0122143_11	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0122143_11	COG	COG2887	RecB family exonuclease	NA
UHGV-0122143_12	eggNOG-mapper	1122605.KB893643_gene671	NA	NA
UHGV-0122143_13	UniRef90	UniRef90_UPI0008DB3248	NA	NA
UHGV-0122143_13	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-0122143_13	Structural annotation	PF09603, TIGR02145	NA	NA
UHGV-0122143_16	PHROG	phrog_5070	NA	unknown function
UHGV-0122143_16	UniRef90	UniRef90_UPI001032F014	polymer-forming cytoskeletal protein	NA
UHGV-0122143_16	eggNOG-mapper	762982.HMPREF9442_00534	NA	NA
UHGV-0122143_16	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0122143_16	Structural annotation	NF040481	NA	NA
UHGV-0122143_20	PHROG	phrog_17289	NA	unknown function
UHGV-0122143_23	Structural annotation	PF13973, PF17384, COG1862	NA	NA
UHGV-0122143_24	KOfam	K01994	gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein	NA
UHGV-0122143_24	UniRef90	UniRef90_A0A396M3W3	LuxR family transcriptional regulator	NA
UHGV-0122143_24	eggNOG-mapper	1235803.C825_03381	helix_turn_helix, Lux Regulon	NA
UHGV-0122143_24	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0122143_25	eggNOG-mapper	1284775.HMPREF1640_07290	NA	NA
UHGV-0122143_25	Structural annotation	PF19555	NA	NA
UHGV-0122143_26	UniRef90	UniRef90_UPI001561F3B8	helix-turn-helix domain-containing protein	NA
UHGV-0122143_26	eggNOG-mapper	1348583.ATLH01000022_gene2306	Transcriptional regulator	NA
UHGV-0122143_26	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0122143_27	UniRef90	UniRef90_A0A316NWF8	DNA-binding protein	NA
UHGV-0122143_27	eggNOG-mapper	585502.HMPREF0645_0768	ORF6N domain	NA
UHGV-0122143_27	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0122143_27	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0122143_27	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0122143_31	PHROG	phrog_16490	NA	unknown function
UHGV-0122143_31	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0122143_31	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0122143_32	PHROG	phrog_31654	NA	unknown function
UHGV-0122143_32	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0122143_33	PHROG	phrog_28898	NA	unknown function
UHGV-0122143_33	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0122143_33	Structural annotation	PF10781	NA	NA
UHGV-0122143_35	PHROG	phrog_38431	NA	unknown function
UHGV-0122143_35	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0122143_35	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0122143_38	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0122143_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0122143_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0122143_42	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-0122143_42	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0122143_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0122143_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0122143_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0122143_43	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0122143_43	UniRef90	UniRef90_A0A5B5VJH5	Phage terminase large subunit	NA
UHGV-0122143_43	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-0122143_43	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0122143_43	COG	COG5410	NA	NA
UHGV-0122143_43	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0122143_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0122143_44	UniRef90	UniRef90_UPI00189D88D6	phage portal protein	NA
UHGV-0122143_44	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0122143_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0122143_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0122143_45	PHROG	phrog_5824	NA	unknown function
UHGV-0122143_45	eggNOG-mapper	445970.ALIPUT_00706	NA	NA
UHGV-0122143_46	PHROG	phrog_20501	NA	unknown function
UHGV-0122143_46	eggNOG-mapper	888059.HMPREF9071_2141	Head fiber protein	NA
UHGV-0122143_46	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0122143_47	PHROG	phrog_29	major head protein	head and packaging
UHGV-0122143_47	UniRef90	UniRef90_A0A316NWE1	Major capsid protein E	NA
UHGV-0122143_47	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-0122143_47	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0122143_47	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0122143_48	PHROG	phrog_7935	NA	unknown function
UHGV-0122143_48	eggNOG-mapper	435591.BDI_0886	NA	NA
UHGV-0122143_48	Pfam	PF20449	NA	DUF6706
UHGV-0122143_48	Structural annotation	PF20449	NA	NA
UHGV-0122143_49	PHROG	phrog_16482	NA	unknown function
UHGV-0122143_49	eggNOG-mapper	585543.HMPREF0969_03358	NA	NA
UHGV-0122143_49	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0122143_50	PHROG	phrog_5377	NA	unknown function
UHGV-0122143_50	eggNOG-mapper	762982.HMPREF9442_01188	NA	NA
UHGV-0122143_51	PHROG	phrog_5597	NA	unknown function
UHGV-0122143_51	eggNOG-mapper	1268240.ATFI01000021_gene159	NA	NA
UHGV-0122143_51	Structural annotation	PF12691, TIGR01633	NA	NA
UHGV-0122143_52	PHROG	phrog_14600	NA	unknown function
UHGV-0122143_52	eggNOG-mapper	445970.ALIPUT_01653	NA	NA
UHGV-0122143_52	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0122143_53	PHROG	phrog_13669	NA	unknown function
UHGV-0122143_53	eggNOG-mapper	585543.HMPREF0969_03352	NA	NA
UHGV-0122143_53	Structural annotation	PF20336	NA	NA
UHGV-0122143_54	PHROG	phrog_14295	NA	unknown function
UHGV-0122143_54	UniRef90	UniRef90_UPI001E5DB762	phage tail tape measure protein	NA
UHGV-0122143_54	eggNOG-mapper	762982.HMPREF9442_01189	NA	NA
UHGV-0122143_54	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0122143_55	PHROG	phrog_6305	tail protein	tail
UHGV-0122143_55	UniRef90	UniRef90_C6ZA45	Putative phage tail component domain protein	NA
UHGV-0122143_55	eggNOG-mapper	1347393.HG726021_gene470	NA	NA
UHGV-0122143_55	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-0122143_56	UniRef90	UniRef90_UPI0011DD4A47	Ig-like domain-containing protein	NA
UHGV-0122143_58	KOfam	K21498	higA-1; antitoxin HigA-1	NA
UHGV-0122143_58	PHROG	phrog_1381	plasmid antitoxin with HTH domain	moron, auxiliary metabolic gene and host takeover
UHGV-0122143_58	UniRef90	UniRef90_A0A316P0E1	Addiction module antidote protein, HigA family	NA
UHGV-0122143_58	eggNOG-mapper	1122971.BAME01000002_gene264	COG3093 Plasmid maintenance system antidote protein	NA
UHGV-0122143_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122143_58	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-0122143_58	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0122143_58	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093	NA	NA
UHGV-0122143_59	KOfam	K07334	higB-1; toxin HigB-1	NA
UHGV-0122143_59	UniRef90	UniRef90_A0A379MSN8	Plasmid maintenance system killer protein	NA
UHGV-0122143_59	eggNOG-mapper	880526.KE386488_gene1638	Plasmid maintenance system killer protein	NA
UHGV-0122143_59	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-0122143_59	COG	COG3549	Plasmid maintenance system killer protein	NA
UHGV-0122143_59	Structural annotation	PF05015, TIGR00053, COG3549	NA	NA
UHGV-0122143_60	PHROG	phrog_17422	NA	unknown function
UHGV-0122143_60	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-0122143_60	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0122143_60	COG	COG4926	Phage-related protein	NA
UHGV-0122143_63	PHROG	phrog_32423	NA	unknown function
UHGV-0122143_63	UniRef90	UniRef90_UPI0011DCF0C5	cell division protein ZapB	NA
UHGV-0122143_63	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-0122143_64	PHROG	phrog_1501	NA	unknown function
UHGV-0122143_64	UniRef90	UniRef90_A0A316NYW2	NA	NA
UHGV-0122143_64	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-0122143_64	Pfam	PF18925	NA	DUF5675
UHGV-0122143_64	Structural annotation	PF18925	NA	NA
UHGV-0122143_65	PHROG	phrog_26448	NA	unknown function
UHGV-0122143_65	UniRef90	UniRef90_A0A134B358	Fmp27_GFWDK domain-containing protein	NA
UHGV-0122143_65	eggNOG-mapper	742725.HMPREF9450_02132	NA	NA
UHGV-0122143_65	Pfam	PF20647	NA	DUF6808
UHGV-0122143_65	Structural annotation	PF20647	NA	NA