UHGV-0122158

Genome information

Genome length 32,706 bps

CDS count 51

Completeness 91.56% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0122158
vOTU ID	vOTU-009368
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_323858
BioSample	SAMN00791917
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.08
Jumbo phage	No

Genome content
Genome length	32,706 bps
GC content	45.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.96%
Average CDS length	593.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0122158_1	PHROG	phrog_18996	NA	unknown function
UHGV-0122158_1	eggNOG-mapper	1273103.NM10_01746	NA	NA
UHGV-0122158_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0122158_2	PHROG	phrog_291	endolysin	lysis
UHGV-0122158_2	UniRef90	UniRef90_UPI00094F24D8	glycosyl hydrolase family 25	NA
UHGV-0122158_2	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0122158_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0122158_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0122158_2	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0122158_3	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-0122158_4	PHROG	phrog_4105	NA	unknown function
UHGV-0122158_6	PHROG	phrog_32639	NA	unknown function
UHGV-0122158_6	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-0122158_7	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0122158_7	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0122158_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0122158_8	PHROG	phrog_521	tail protein	tail
UHGV-0122158_8	UniRef90	UniRef90_UPI000478E68D	NA	NA
UHGV-0122158_8	eggNOG-mapper	1122917.KB899673_gene661	NA	NA
UHGV-0122158_8	COG	COG3778	NA	NA
UHGV-0122158_8	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0122158_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0122158_9	UniRef90	UniRef90_UPI001D063BBB	baseplate J/gp47 family protein	NA
UHGV-0122158_9	eggNOG-mapper	1123239.KB898628_gene3248	Baseplate J-like protein	NA
UHGV-0122158_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0122158_9	COG	COG3299	NA	NA
UHGV-0122158_9	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0122158_10	UniRef90	UniRef90_UPI001D06F821	NA	NA
UHGV-0122158_10	Pfam	PF10934	NA	DUF2634
UHGV-0122158_10	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0122158_10	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0122158_11	PHROG	phrog_579	NA	unknown function
UHGV-0122158_11	UniRef90	UniRef90_UPI001D082D0B	NA	NA
UHGV-0122158_11	eggNOG-mapper	1095747.HMPREF1049_1996	NA	NA
UHGV-0122158_11	Pfam	PF10844	NA	DUF2577
UHGV-0122158_11	Structural annotation	PF10844	NA	NA
UHGV-0122158_12	PHROG	phrog_400	tail protein	tail
UHGV-0122158_12	UniRef90	UniRef90_UPI000F0469E9	CHAP domain-containing protein	NA
UHGV-0122158_12	eggNOG-mapper	1121087.AUCK01000004_gene1074	NA	NA
UHGV-0122158_12	COG	COG3500	NA	NA
UHGV-0122158_12	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0122158_13	PHROG	phrog_5184	NA	unknown function
UHGV-0122158_13	UniRef90	UniRef90_A0A5C0SFK8	Phage portal protein	NA
UHGV-0122158_13	eggNOG-mapper	97138.C820_00603	LysM domain	NA
UHGV-0122158_13	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0122158_14	PHROG	phrog_7972	NA	unknown function
UHGV-0122158_14	UniRef90	UniRef90_A0A8G0NSD2	Phage tail protein	NA
UHGV-0122158_14	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-0122158_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0122158_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0122158_16	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0122158_16	eggNOG-mapper	318464.IO99_13715	NA	NA
UHGV-0122158_16	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0122158_17	PHROG	phrog_365	tail protein	tail
UHGV-0122158_17	UniRef90	UniRef90_UPI000429BBBA	phage tail tube protein	NA
UHGV-0122158_17	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0122158_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0122158_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0122158_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0122158_18	UniRef90	UniRef90_A0A7X2XHA8	Phage tail sheath protein	NA
UHGV-0122158_18	eggNOG-mapper	1095747.HMPREF1049_2005	Phage tail sheath C-terminal domain	NA
UHGV-0122158_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0122158_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0122158_19	PHROG	phrog_525	NA	unknown function
UHGV-0122158_19	Pfam	PF20765	NA	DUF6838
UHGV-0122158_20	UniRef90	UniRef90_UPI000410849E	HK97 gp10 family phage protein	NA
UHGV-0122158_20	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0122158_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0122158_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0122158_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0122158_21	UniRef90	UniRef90_UPI000415E870	phage head closure protein	NA
UHGV-0122158_21	eggNOG-mapper	1285586.H131_21292	Phage head-tail joining protein	NA
UHGV-0122158_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0122158_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0122158_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0122158_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0122158_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0122158_22	UniRef90	UniRef90_UPI00041E0DD1	head-tail connector protein	NA
UHGV-0122158_22	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-0122158_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0122158_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0122158_23	PHROG	phrog_2616	NA	unknown function
UHGV-0122158_23	Structural annotation	PF01281	NA	NA
UHGV-0122158_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0122158_24	UniRef90	UniRef90_UPI000400CBEC	phage major capsid protein	NA
UHGV-0122158_24	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-0122158_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0122158_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0122158_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0122158_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0122158_25	KOfam	K06904	NA	NA
UHGV-0122158_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0122158_25	UniRef90	UniRef90_UPI000415264F	HK97 family phage prohead protease	NA
UHGV-0122158_25	eggNOG-mapper	1285586.H131_21307	Caudovirus prohead serine protease	NA
UHGV-0122158_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0122158_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0122158_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0122158_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0122158_26	UniRef90	UniRef90_UPI0003FDC1C6	phage portal protein	NA
UHGV-0122158_26	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-0122158_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0122158_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0122158_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0122158_26	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0122158_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0122158_27	UniRef90	UniRef90_UPI000406183D	terminase large subunit	NA
UHGV-0122158_27	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-0122158_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0122158_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0122158_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0122158_28	PHROG	phrog_13845	NA	unknown function
UHGV-0122158_28	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0122158_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0122158_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0122158_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0122158_29	UniRef90	UniRef90_UPI00138AE710	HNH endonuclease	NA
UHGV-0122158_29	eggNOG-mapper	1414720.CBYM010000001_gene694	HNH nucleases	NA
UHGV-0122158_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0122158_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0122158_30	UniRef90	UniRef90_UPI000368796A	NA	NA
UHGV-0122158_30	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0122158_30	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0122158_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0122158_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0122158_32	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0122158_32	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0122158_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0122158_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0122158_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0122158_33	PHROG	phrog_236	nucleotide kinase	other
UHGV-0122158_33	UniRef90	UniRef90_A0A7X1ZA33	NA	NA
UHGV-0122158_33	eggNOG-mapper	1302286.BAOT01000008_gene594	NA	NA
UHGV-0122158_33	Pfam	PF11753	NA	DUF3310
UHGV-0122158_36	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0122158_36	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0122158_36	UniRef90	UniRef90_A0A354WRE6	DNA primase	NA
UHGV-0122158_36	eggNOG-mapper	1273103.NM10_06846	Primase C terminal 2 (PriCT-2)	NA
UHGV-0122158_36	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0122158_36	Pfam	PF13481	AAA domain	AAA_25
UHGV-0122158_36	COG	COG3598	RecA-family ATPase	NA
UHGV-0122158_36	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0122158_37	PHROG	phrog_2698	NA	unknown function
UHGV-0122158_37	UniRef90	UniRef90_A0A359EX11	NA	NA
UHGV-0122158_37	Pfam	PF05037	NA	DUF669
UHGV-0122158_37	Structural annotation	PF05037, NF007495	NA	NA
UHGV-0122158_38	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0122158_38	UniRef90	UniRef90_A0A7G7VIC5	ATP-binding protein	NA
UHGV-0122158_38	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0122158_38	Pfam	PF13479	AAA domain	AAA_24
UHGV-0122158_38	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0122158_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0122158_39	UniRef90	UniRef90_E4LA68	Siphovirus Gp157	NA
UHGV-0122158_39	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-0122158_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0122158_39	Structural annotation	PF05565	NA	NA
UHGV-0122158_42	PHROG	phrog_14105	NA	unknown function
UHGV-0122158_42	UniRef90	UniRef90_A0A239CRY1	Pentapeptide repeat-containing protein	NA
UHGV-0122158_42	eggNOG-mapper	1123276.KB893279_gene2213	Pentapeptide repeats (8 copies)	NA
UHGV-0122158_42	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0122158_42	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0122158_44	PHROG	phrog_14367	NA	unknown function
UHGV-0122158_44	UniRef90	UniRef90_A0A1G5VJC5	LysM domain-containing protein	NA
UHGV-0122158_44	eggNOG-mapper	568816.Acin_1401	LysM domain	NA
UHGV-0122158_44	Pfam	PF01476	LysM domain	LysM
UHGV-0122158_44	COG	COG1388	LysM repeat	NA
UHGV-0122158_44	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0122158_47	UniRef90	UniRef90_UPI000F8E0BA6	NA	NA
UHGV-0122158_47	eggNOG-mapper	699218.HMPREF0889_0316	NA	NA
UHGV-0122158_47	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0122158_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0122158_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0122158_48	UniRef90	UniRef90_UPI001D08154B	helix-turn-helix transcriptional regulator	NA
UHGV-0122158_48	eggNOG-mapper	910314.HMPREF9220_0646	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0122158_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0122158_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0122158_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0122158_49	PHROG	phrog_87	metallo-protease	other
UHGV-0122158_49	UniRef90	UniRef90_A0A8D5A4J0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0122158_49	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-0122158_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0122158_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0122158_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0122158_50	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0122158_50	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0122158_50	UniRef90	UniRef90_UPI000685BB22	3'-5' exoribonuclease	NA
UHGV-0122158_50	eggNOG-mapper	1104325.M7W_843	3' exoribonuclease, RNase T-like	NA
UHGV-0122158_50	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0122158_50	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0122158_50	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0122158_50	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0122158_50	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-0122158_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0122158_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0122158_51	UniRef90	UniRef90_UPI001D05C6CD	recombinase family protein	NA
UHGV-0122158_51	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-0122158_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0122158_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0122158_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0122158_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0122158_51	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA